Miyakogusa Predicted Gene

Lj1g3v2138380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2138380.1 Non Characterized Hit- tr|C5WWN8|C5WWN8_SORBI
Putative uncharacterized protein Sb01g032790 OS=Sorghu,57.47,3e-19,PUA
domain-like,PUA-like domain; seg,NULL; SUBFAMILY NOT NAMED,NULL; RING
FINGER PROTEIN 127,NULL; L,CUFF.28880.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g112420.1 | ATP-dependent protease LA (lon) domain protein...   157   3e-39
Medtr3g037230.1 | zinc finger, C3HC4 type (RING finger) protein ...    52   3e-07
Medtr3g037230.2 | zinc finger, C3HC4 type (RING finger) protein ...    51   3e-07
Medtr3g037230.3 | zinc finger, C3HC4 type (RING finger) protein ...    51   3e-07

>Medtr3g112420.1 | ATP-dependent protease LA (lon) domain protein |
           HC | chr3:52675931-52677387 | 20130731
          Length = 294

 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 92/139 (66%), Gaps = 8/139 (5%)

Query: 22  PCQNPTRLSINPNFPSSSTT-------HVLXXXXXXXGGNL-TCSASSFSEKHHTDSPRS 73
           P  N T LS+NP    SST        +VL         +L  CSASSF EKHHT+SP S
Sbjct: 15  PLLNLTPLSLNPKIFQSSTPTPSPPHLNVLHHSRRRNSTSLLRCSASSFPEKHHTNSPNS 74

Query: 74  DDXXXXXXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIYTDAVTGTAEVGC 133
           DD               GAILPLQIFEFRYR+MMHTLL TDLRFGVIY DAVTG +EVGC
Sbjct: 75  DDVTELPLFPLPLVLFPGAILPLQIFEFRYRVMMHTLLQTDLRFGVIYNDAVTGLSEVGC 134

Query: 134 VGEVIKHERLVDDRFFLIC 152
           VGEVIKHERLVDDRFFLIC
Sbjct: 135 VGEVIKHERLVDDRFFLIC 153


>Medtr3g037230.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr3:13637290-13627006 | 20130731
          Length = 480

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 94  LPLQIFEFRYRIMMHTLLHTDLRFGVIYTDAVTGT-AEVGCVGEVIKHERLVDDRFFL 150
            PL IFE RYR+M+  ++  + R G++  DA TG+ AE GC  E+ + E L D RF++
Sbjct: 288 FPLNIFEPRYRLMVRRIMEGNHRMGMVIIDASTGSLAEFGCEVEITECEPLPDGRFYI 345


>Medtr3g037230.2 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr3:13636031-13627006 | 20130731
          Length = 433

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 94  LPLQIFEFRYRIMMHTLLHTDLRFGVIYTDAVTGT-AEVGCVGEVIKHERLVDDRFFL 150
            PL IFE RYR+M+  ++  + R G++  DA TG+ AE GC  E+ + E L D RF++
Sbjct: 241 FPLNIFEPRYRLMVRRIMEGNHRMGMVIIDASTGSLAEFGCEVEITECEPLPDGRFYI 298


>Medtr3g037230.3 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr3:13635998-13627006 | 20130731
          Length = 433

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 94  LPLQIFEFRYRIMMHTLLHTDLRFGVIYTDAVTGT-AEVGCVGEVIKHERLVDDRFFL 150
            PL IFE RYR+M+  ++  + R G++  DA TG+ AE GC  E+ + E L D RF++
Sbjct: 241 FPLNIFEPRYRLMVRRIMEGNHRMGMVIIDASTGSLAEFGCEVEITECEPLPDGRFYI 298