Miyakogusa Predicted Gene

Lj1g3v2124910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2124910.1 Non Characterized Hit- tr|I1KQB7|I1KQB7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45155
PE,77.36,4e-17,Nucleoporin_N,Nucleoporin, Nup133/Nup155-like,
N-terminal,CUFF.28558.1
         (74 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g105290.1 | nuclear pore complex Nup155-like protein | HC ...    91   3e-19

>Medtr8g105290.1 | nuclear pore complex Nup155-like protein | HC |
           chr8:44427185-44416638 | 20130731
          Length = 1484

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/53 (75%), Positives = 42/53 (79%)

Query: 22  VEVVNRWELPPVLKERCIAAGVEGSAFGGIFPEICRAWATFHNSFFLWRFDKW 74
           VEV N WELPPVL ER  AAG EG+AF GIFPEI RAWA+  NS FLWRFDKW
Sbjct: 58  VEVANTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKW 110