Miyakogusa Predicted Gene

Lj1g3v2124840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2124840.1 Non Characterized Hit- tr|F6H056|F6H056_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,51.92,0.000000004,seg,NULL,CUFF.28554.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g112000.1 | transmembrane protein, putative | HC | chr3:52...    75   3e-14

>Medtr3g112000.1 | transmembrane protein, putative | HC |
          chr3:52409611-52409064 | 20130731
          Length = 143

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 1  MTEKTLVPIFVLWAFXXXXXXXXXXXSENSKADLDFNGNRTEAMKVRRMIGHDTENHFIR 60
          M E+TL+P FV WAF           SENSKADL+ NGN TE MKVRRMIGH T+++ IR
Sbjct: 3  MRERTLIPTFVFWAFLTLITPTLILLSENSKADLELNGNITETMKVRRMIGH-TQSNIIR 61

Query: 61 T 61
          T
Sbjct: 62 T 62