Miyakogusa Predicted Gene

Lj1g3v2098330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2098330.1 tr|A4S8T6|A4S8T6_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,35.9,2e-18,no description,NULL; NTF2-like,NULL; SnoaL_3,NULL;
UVR,UVR domain,CUFF.28518.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g019910.1 | SnoaL-like domain protein | HC | chr4:6364560-...   347   4e-96
Medtr8g099610.1 | nuclear transport factor 2 (NTF2) family prote...    57   1e-08

>Medtr4g019910.1 | SnoaL-like domain protein | HC |
           chr4:6364560-6361835 | 20130731
          Length = 255

 Score =  347 bits (891), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 163/227 (71%), Positives = 187/227 (82%)

Query: 1   MALFGTTLPFNGLCSTHKELNFIRGSFINSSQKLHHVCLPSFTPNRLVFGRSCGKGDQLC 60
           MAL+ T L FNGL ST KE +F+ GS INS  K H VCL SF PN+LVFG+S  +GD+LC
Sbjct: 1   MALYATALSFNGLSSTLKEFSFLPGSVINSFHKRHDVCLQSFNPNKLVFGKSFERGDELC 60

Query: 61  RFTDQCIKKQMGRFSRRQGAKSEDSEGTLSSDNVAVDETTLVQELESAIAEENYAKAAEI 120
              +QC+K QM RF  RQG KSED+E  LSS+++A+DE TL +EL++AIAEENYAKAAEI
Sbjct: 61  LLPNQCLKLQMRRFRTRQGVKSEDAESMLSSEDIALDENTLEEELQNAIAEENYAKAAEI 120

Query: 121 RDILKNLKKDRETTLFGANSRFYESFKNGDLAAMQAMWAKSDEVCCVHPGMKGISGYDDV 180
           RD LKNL+KD  T +FGANS+FY+SF+NGDLAAMQ MWAK DEVCCVHPGMKGISGYDDV
Sbjct: 121 RDTLKNLQKDSNTAVFGANSKFYDSFRNGDLAAMQGMWAKMDEVCCVHPGMKGISGYDDV 180

Query: 181 IESWNIVWANYEFPLEIKLEDIKFHVGEDMGYVTCMEFVKTKGGRWG 227
           IESW+ VWANYEFPL+IKLEDIK H   DMGYVTCMEFVK KGGRWG
Sbjct: 181 IESWDFVWANYEFPLQIKLEDIKVHARGDMGYVTCMEFVKAKGGRWG 227


>Medtr8g099610.1 | nuclear transport factor 2 (NTF2) family protein
           | HC | chr8:42114160-42117440 | 20130731
          Length = 284

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 138 ANSRFYESFKNGDLAAMQAMWAKSDEVCCVHPGMKGISGYDDVIESWNIVWANYEFPLEI 197
            N+ F+   ++  ++AM   W  +D V CVH   +  SGY+ V++SW +V+ N++  L  
Sbjct: 163 VNTEFFNILRDKSISAMSRFWLNADYVKCVHASGELFSGYNGVMQSWQLVF-NWDQGLNF 221

Query: 198 KLEDIKFHVGEDMGYVTCMEFVKTKGG 224
           ++ D++  V  DM +VT   +V    G
Sbjct: 222 QVLDVRARVLTDMAWVTMKTYVDMDTG 248