Miyakogusa Predicted Gene

Lj1g3v2098300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2098300.1 Non Characterized Hit- tr|D7M6A7|D7M6A7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,36.7,6e-19,WGG,Pre-rRNA-processing protein TSR2; seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.28514.1
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g043450.1 | Pre-rRNA-processing protein TSR2, motif protei...   192   2e-49
Medtr8g043430.1 | Pre-rRNA-processing protein TSR2, motif protei...   118   6e-27
Medtr8g043410.1 | Pre-rRNA-processing protein TSR2, motif protei...   117   7e-27
Medtr1g035200.1 | Pre-rRNA-processing protein TSR2, motif protei...   115   5e-26
Medtr5g006380.1 | Pre-rRNA-processing protein TSR2, motif protei...    87   1e-17
Medtr7g086210.1 | hypothetical protein | LC | chr7:33433930-3343...    72   7e-13
Medtr6g012740.1 | pre-rRNA-processing protein TSR2 | LC | chr6:3...    67   2e-11
Medtr7g085465.1 | hypothetical protein | LC | chr7:33111552-3311...    64   1e-10
Medtr7g109770.1 | hypothetical protein | LC | chr7:44945332-4494...    52   5e-07

>Medtr8g043450.1 | Pre-rRNA-processing protein TSR2, motif protein |
           HC | chr8:16680605-16677438 | 20130731
          Length = 206

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 132/192 (68%), Gaps = 6/192 (3%)

Query: 7   LQGESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQSKEPLYI 66
           LQG+S + F+EGI LVL+RWSAL+TAVENEW GRD+NLKA  LAA+VL+WFTQSKE LYI
Sbjct: 9   LQGQSLQAFTEGIGLVLSRWSALRTAVENEWAGRDTNLKAQTLAANVLAWFTQSKETLYI 68

Query: 67  DDLEAIFDEGMLSLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREANIKQAARPR 126
           DDLE +  +G +S+N+ +EDGS EEVA +LM M+ EC+EGNF S++ LREA+   AA   
Sbjct: 69  DDLENLLFQGGVSVNIVIEDGSDEEVAEDLMIMYGECLEGNFSSVERLREASRNPAAYSG 128

Query: 127 LAQIVXXXXXXXXXXXXXIIGGDNSSNMDVDIQNFESDMNSVNKPAN-----EPLSKAAA 181
           + +IV             I   DNS+NMDVDI   ES++NS+NK  N      P    + 
Sbjct: 129 VQKIVNGNGDEDDDSDENIE-DDNSANMDVDIPKSESNLNSMNKTVNGSQPDNPGEDNSG 187

Query: 182 EADDGWVAVSRR 193
           E DDGW  VSRR
Sbjct: 188 EGDDGWSVVSRR 199


>Medtr8g043430.1 | Pre-rRNA-processing protein TSR2, motif protein |
           LC | chr8:16673260-16670236 | 20130731
          Length = 170

 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 87/118 (73%), Gaps = 1/118 (0%)

Query: 1   MEGSKFLQGESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQS 60
           M GS+ LQGES   F+EG+  +LNRW  L++AV+ + GG +S+LKA +L  DV SWFTQS
Sbjct: 1   MVGSRVLQGESLEAFNEGVGYILNRWPPLRSAVDYQQGGENSHLKAEKLIGDVRSWFTQS 60

Query: 61  KEPLYIDDLEAIFDEGML-SLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREA 117
            EPL+IDDL+ +  EGM+ + ++++ D S  ++A  LM +H++C+ G+FR+I+ LR+A
Sbjct: 61  NEPLHIDDLKNLIYEGMVAAFDLKICDESDGDIAVELMVIHEDCLNGDFRNIEHLRKA 118


>Medtr8g043410.1 | Pre-rRNA-processing protein TSR2, motif protein |
           LC | chr8:16666385-16665394 | 20130731
          Length = 132

 Score =  117 bits (294), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 1   MEGSKFLQGESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQS 60
           M   + LQGES + F+EGID V N W ALQ ++    GG +S+LKA +L  DV  WF QS
Sbjct: 1   MVNRRVLQGESLKAFNEGIDYVFNHWDALQNSIYYHRGGDNSHLKAKRLIDDVRDWFIQS 60

Query: 61  KEPLYIDDLEAIFDEGML-SLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREANI 119
            +PL+IDDL+   +E +L   N+++ DGS E +A  LM  H++C+ GNF +I+  REAN 
Sbjct: 61  NDPLHIDDLKGFINERLLVDFNLQIADGSDEHIAVELMVTHEDCLNGNFMTIEFPREANR 120

Query: 120 KQAARPRLAQI 130
                P + ++
Sbjct: 121 NPNFYPSMEEV 131


>Medtr1g035200.1 | Pre-rRNA-processing protein TSR2, motif protein |
           LC | chr1:12606155-12608730 | 20130731
          Length = 261

 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 83/123 (67%), Gaps = 1/123 (0%)

Query: 9   GESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQSKEPLYIDD 68
           GE  +VF EGI LVL RWSALQ A+E  W   +S L+A  LA+++LSWFT SK  L + D
Sbjct: 97  GEWIQVFKEGIGLVLGRWSALQHAIEQGWCKGNSRLEAQNLASNILSWFTHSKN-LDVYD 155

Query: 69  LEAIFDEGMLSLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREANIKQAARPRLA 128
           LE + D+ M    +  ++GS+EEVA  LM M++EC+ GNF S++ LREA+  Q A P + 
Sbjct: 156 LETLLDKAMDFFKLVHQEGSVEEVAKLLMKMYEECLVGNFMSVERLREASRNQVAHPPVG 215

Query: 129 QIV 131
           ++V
Sbjct: 216 KVV 218


>Medtr5g006380.1 | Pre-rRNA-processing protein TSR2, motif protein
          | HC | chr5:885842-886802 | 20130731
          Length = 128

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 11 SKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQSKEPLYIDDLE 70
          S+    E I L+L+RW ALQ A++N+WGG DS  K+HQLA+ + SW ++S  P+ I+DLE
Sbjct: 12 SRIRLQESIILLLSRWYALQMAIKNQWGGCDSLQKSHQLASHLFSWLSKSNAPIRIEDLE 71

Query: 71 AIFDEGM-LSLNVEVEDGSIEEVA 93
           +  E M L+ N E+EDGSIE+V 
Sbjct: 72 NLLYESMLLTFNTEIEDGSIEQVC 95


>Medtr7g086210.1 | hypothetical protein | LC |
           chr7:33433930-33432245 | 20130731
          Length = 375

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%)

Query: 11  SKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQSKEPLYIDDLE 70
           S RVF EG+ L++         + N+ G   S L   QLA D+L WFTQ+ +P+  D +E
Sbjct: 251 SIRVFEEGVGLLMEDLWVRHVFIHNKCGSNPS-LMLQQLAEDILFWFTQTIKPVSFDYIE 309

Query: 71  AIFDEGMLSLNVEVEDG--SIEEVAGNLMAMHDECVEGNFRSIDILREANIKQAA 123
            I    +  L +  ++   + +EVA  LM M++EC+  NF S+  LRE N+ + +
Sbjct: 310 WIIRNELYPLPILAKNAFATTQEVAKKLMVMYEECLLDNFSSVVTLREENLSRGS 364



 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 19/131 (14%)

Query: 7   LQGESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQ---------LAADVLSWF 57
           L+ +S +VF EGI L +N W  ++  +      R  +L  ++         L   + S F
Sbjct: 13  LEEDSMKVFREGISLAINFWWVIRLKI------RRKSLCDYESSPERCVEWLCDTIFSRF 66

Query: 58  TQSKE-PLYIDDLEAIFDEGMLSLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILRE 116
            +SK  P     L+  F       NV  ED SI EV   L++M+ EC++ +F S+ IL+E
Sbjct: 67  IRSKHLPSATIKLQLKFQLISFLSNVPPEDNSILEVCDQLVSMYQECLQHDFSSVQILKE 126

Query: 117 ANIKQAARPRL 127
           A+   A R R+
Sbjct: 127 AD---AHRKRV 134


>Medtr6g012740.1 | pre-rRNA-processing protein TSR2 | LC |
           chr6:3942873-3943439 | 20130731
          Length = 188

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 3/124 (2%)

Query: 10  ESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQSK-EPLYIDD 68
           E  +VF EGI LV+N W  +Q+ ++ E GG  S+ K  +L   + SWF +SK E L +  
Sbjct: 13  EEMKVFKEGIQLVINSWWEIQSFIKKERGGIHSSRKVDELCHSIFSWFIESKEESLRLAS 72

Query: 69  LEAIFDEGMLSLN--VEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREANIKQAARPR 126
            +    + M      +   D S++ +   + AM++EC  G+F S+++++E ++  A R  
Sbjct: 73  AKITLPQRMFRFVGIIGSLDDSVKRLCELVWAMYEECNTGDFTSVELIKEVSLTLARRLI 132

Query: 127 LAQI 130
             Q+
Sbjct: 133 QKQV 136


>Medtr7g085465.1 | hypothetical protein | LC |
           chr7:33111552-33113945 | 20130731
          Length = 132

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 13/118 (11%)

Query: 1   MEGSKFLQGESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQS 60
           MEGSK ++GES +VF +GI++V+N W            G   NL   Q A    S+F   
Sbjct: 10  MEGSKMMEGESMKVFRDGINMVINFWWRF---------GNQPNLI--QGAFVTASFFDMP 58

Query: 61  KEPLYIDDLEAIFDEGMLSLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREAN 118
             P     ++      +  LN    D SIEEV   L+ M++EC++G+F S+ ILREA+
Sbjct: 59  PRPSAKITIKQQITHFIGQLNSL--DNSIEEVCEQLLVMYEECLQGDFSSVKILREAS 114


>Medtr7g109770.1 | hypothetical protein | LC |
           chr7:44945332-44946260 | 20130731
          Length = 289

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)

Query: 6   FLQGESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFT-QSKEPL 64
            L G+   VF EGI L +N W  ++  V  E+GG  + L      +D     T  S    
Sbjct: 4   LLNGKPMEVFREGICLAINYWWEIRCFVGREFGGNLNQLSDSLFQSDQDQIVTLPSSATT 63

Query: 65  YIDDLEAIFDEGMLSLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREANIKQA 122
            + +L + +   ++ L     D S++EV+  L+ M+ EC++ +F S+ I+ EAN++ A
Sbjct: 64  KLKELISFYGFDLIYL-----DNSLQEVSEQLVLMYHECLQRDFTSVQIILEANLRSA 116