Miyakogusa Predicted Gene

Lj1g3v2095670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2095670.1 Non Characterized Hit- tr|B9R6S8|B9R6S8_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.18,0.000000000000008,seg,NULL; coiled-coil,NULL,CUFF.28462.1
         (215 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g110590.1 | transmembrane protein, putative | HC | chr3:51...    72   3e-13
Medtr5g005430.1 | transmembrane protein, putative | HC | chr5:44...    51   1e-06
Medtr1g105890.1 | transmembrane protein, putative | HC | chr1:47...    48   8e-06

>Medtr3g110590.1 | transmembrane protein, putative | HC |
          chr3:51687193-51686777 | 20130731
          Length = 138

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 46/82 (56%), Gaps = 20/82 (24%)

Query: 1  MLKQLPNRNQRTKGSMIKQGFKIFTLIAVIIWLLFQLNHSLDKRKPNEDNTKVFEKLKAS 60
          MLKQ  NRN RT G  +KQG +IFTLI V IWLL+QL H                    S
Sbjct: 1  MLKQSHNRNPRTNGYKVKQGLQIFTLIVVGIWLLYQLKH--------------------S 40

Query: 61 HESKKLGRKWFQPWINKPYGLM 82
          HE+K LGRK  Q W+ KPY LM
Sbjct: 41 HENKILGRKGLQLWMKKPYELM 62


>Medtr5g005430.1 | transmembrane protein, putative | HC |
          chr5:444636-441597 | 20130731
          Length = 560

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 1  MLKQLPNRNQRTKGSMIKQGFKIFTLIAVIIWLLFQLNHSLDKRKP-NEDNTKVFEKLKA 59
          M+K+  +RN R+KG  +K   +I  L+ + +WL++Q+  S DK+K  +E + KV    + 
Sbjct: 1  MIKRSSSRNNRSKGVKVKHVLQIMLLVGICLWLIYQVKRSHDKKKEFDESDKKVSVGAQN 60

Query: 60 SHESKKLGRKWFQPWINK 77
          ++   +LGRK   P  N+
Sbjct: 61 AYRITELGRKDLLPGKNE 78


>Medtr1g105890.1 | transmembrane protein, putative | HC |
          chr1:47816020-47814383 | 20130731
          Length = 545

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MLKQLPN-RNQRTKGSMIKQGFKIFTLIAVIIWLLFQLNHSLDKRKPNEDNTKVFEKLKA 59
          M+K+ P+ RNQR+KG  +K   +   L+ V  WL++Q+ H+ DK+K  + N         
Sbjct: 1  MIKRNPSSRNQRSKGFKVKHVLQAILLLGVCFWLIYQVKHNHDKKKEFDKNDTKLPIRTE 60

Query: 60 SHESKKLGRKWFQP 73
          + +  KLGRK   P
Sbjct: 61 TDQILKLGRKDLHP 74