Miyakogusa Predicted Gene
- Lj1g3v2095550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2095550.1 Non Characterized Hit- tr|J3MR49|J3MR49_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB08G1,25.55,1e-17,no
description,NULL; coiled-coil,NULL; KH_TYPE_1,K Homology domain, type
1; Eukaryotic type KH-domai,CUFF.28458.1
(683 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 763 0.0
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 763 0.0
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 247 4e-65
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 209 8e-54
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 203 5e-52
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 203 5e-52
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 198 1e-50
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 193 5e-49
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 193 5e-49
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 193 5e-49
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 193 5e-49
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 170 5e-42
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 164 2e-40
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 162 7e-40
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 157 2e-38
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 152 1e-36
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 102 9e-22
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 98 2e-20
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 98 2e-20
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 97 7e-20
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 96 9e-20
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 92 2e-18
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 91 3e-18
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 91 3e-18
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 91 3e-18
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 91 3e-18
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 91 4e-18
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 91 5e-18
Medtr5g049770.1 | RNA-binding KH domain protein | HC | chr5:2176... 82 2e-15
Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-3153788... 75 3e-13
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804... 68 3e-11
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803... 67 8e-11
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 60 1e-08
Medtr5g008420.1 | RNA-binding KH domain protein | HC | chr5:1773... 56 1e-07
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 55 3e-07
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 55 3e-07
Medtr1g090773.1 | binding to TOMV RNA 1L (long form) protein | H... 54 6e-07
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/548 (71%), Positives = 443/548 (80%), Gaps = 21/548 (3%)
Query: 143 SQGEKANSNSVIHSAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGC 202
SQ EK NSN I +A+ LVF+R+ E +G +ES K F RLLILSNQVGC
Sbjct: 129 SQSEKVNSNPTIM----RAVMLVFERVAED-----EGGDES-KKGYFGLRLLILSNQVGC 178
Query: 203 LLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLL 262
+LGKGGSVIK+MSAESGAQIRILPK+++P CAS SDE+VQITGGVEVVR+ALQSV QL+
Sbjct: 179 ILGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLV 238
Query: 263 ENPPRDHESLSTNFTGXXXXX-------XXXXXXXXXXFAAGPTDTSVFHSAPSLISKFH 315
EN PRDHESL TN TG FA GP + VFHSAP +I KFH
Sbjct: 239 ENSPRDHESLPTNLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAP-MIPKFH 297
Query: 316 EGAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDC 375
EGAI GRMRP E+LTFRLLCP+E VGNLIGKGG+IIK +QQETASEIKVI+A+P SEDC
Sbjct: 298 EGAILGRMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDC 357
Query: 376 VIVISGPAHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGS 435
+I+ISGPAHPDDRISPVQEA+FRVQNR++RA+ D EHSMLARV+VSS IGCLLGKGGS
Sbjct: 358 IIIISGPAHPDDRISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGS 417
Query: 436 IITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDA 495
II EMR LSGAHIR+LGKDK PKC SE++EVIQ++G IEAVHDALLQITTRL+++FFRDA
Sbjct: 418 IIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDA 477
Query: 496 YPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPFMNNIHR 555
+PSAN+PSN AFLD PF PYLGRRG+SPPGMYSDLGP PHA FPLDD PPFMNN++R
Sbjct: 478 FPSANFPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYR 537
Query: 556 SGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATXXXXX 615
SGIPP I+ERKPWGP+GILEGGGHMGLP+FAGG PRRI GF GG+QPIIT T T
Sbjct: 538 SGIPPLISERKPWGPKGILEGGGHMGLPEFAGG-PRRISGFAGGSQPIITST--TVEVVV 594
Query: 616 XXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAF 675
IYGE+GECL+QILQISDA ++ITDP PGAVETKIIISGTPEQT+AAQSLIQAF
Sbjct: 595 PRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQTNAAQSLIQAF 654
Query: 676 VMSERDSG 683
VMSER+SG
Sbjct: 655 VMSERESG 662
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 107/213 (50%), Gaps = 48/213 (22%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVI-----SGPAH 384
+ FRLLCPA K+G +IGKGG+II ++ ET ++K+ + VP E+ VI G A
Sbjct: 32 VVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESEEGSAE 91
Query: 385 PDDRISPVQEAVFRVQNRVARAIPDVNEHS-----------------------MLA---- 417
++ E+ +V++ + D NE ML
Sbjct: 92 QGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLVFERV 151
Query: 418 ----------------RVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCAS 461
R+L+ SNQ+GC+LGKGGS+I M SGA IRIL K++IP CAS
Sbjct: 152 AEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIPACAS 211
Query: 462 ENEEVIQITGEIEAVHDALLQITTRLKHHFFRD 494
+++E++QITG +E V AL + +L + RD
Sbjct: 212 DSDELVQITGGVEVVRRALQSVFQQLVENSPRD 244
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 28 LDAAAGGVVFRMLCPATRXXXXXXXXXXXXSQIRQETGVNIKIDEPTPGCDERVIIF 84
LD ++ VVFR+LCPA++ SQIR ETGV +KI+EP PGC+ERVI F
Sbjct: 26 LDVSSS-VVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITF 81
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/548 (71%), Positives = 443/548 (80%), Gaps = 21/548 (3%)
Query: 143 SQGEKANSNSVIHSAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGC 202
SQ EK NSN I +A+ LVF+R+ E +G +ES K F RLLILSNQVGC
Sbjct: 129 SQSEKVNSNPTIM----RAVMLVFERVAED-----EGGDES-KKGYFGLRLLILSNQVGC 178
Query: 203 LLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLL 262
+LGKGGSVIK+MSAESGAQIRILPK+++P CAS SDE+VQITGGVEVVR+ALQSV QL+
Sbjct: 179 ILGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLV 238
Query: 263 ENPPRDHESLSTNFTGXXXXX-------XXXXXXXXXXFAAGPTDTSVFHSAPSLISKFH 315
EN PRDHESL TN TG FA GP + VFHSAP +I KFH
Sbjct: 239 ENSPRDHESLPTNLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAP-MIPKFH 297
Query: 316 EGAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDC 375
EGAI GRMRP E+LTFRLLCP+E VGNLIGKGG+IIK +QQETASEIKVI+A+P SEDC
Sbjct: 298 EGAILGRMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDC 357
Query: 376 VIVISGPAHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGS 435
+I+ISGPAHPDDRISPVQEA+FRVQNR++RA+ D EHSMLARV+VSS IGCLLGKGGS
Sbjct: 358 IIIISGPAHPDDRISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGS 417
Query: 436 IITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDA 495
II EMR LSGAHIR+LGKDK PKC SE++EVIQ++G IEAVHDALLQITTRL+++FFRDA
Sbjct: 418 IIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDA 477
Query: 496 YPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPFMNNIHR 555
+PSAN+PSN AFLD PF PYLGRRG+SPPGMYSDLGP PHA FPLDD PPFMNN++R
Sbjct: 478 FPSANFPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYR 537
Query: 556 SGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATXXXXX 615
SGIPP I+ERKPWGP+GILEGGGHMGLP+FAGG PRRI GF GG+QPIIT T T
Sbjct: 538 SGIPPLISERKPWGPKGILEGGGHMGLPEFAGG-PRRISGFAGGSQPIITST--TVEVVV 594
Query: 616 XXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAF 675
IYGE+GECL+QILQISDA ++ITDP PGAVETKIIISGTPEQT+AAQSLIQAF
Sbjct: 595 PRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQTNAAQSLIQAF 654
Query: 676 VMSERDSG 683
VMSER+SG
Sbjct: 655 VMSERESG 662
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 107/213 (50%), Gaps = 48/213 (22%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVI-----SGPAH 384
+ FRLLCPA K+G +IGKGG+II ++ ET ++K+ + VP E+ VI G A
Sbjct: 32 VVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESEEGSAE 91
Query: 385 PDDRISPVQEAVFRVQNRVARAIPDVNEHS-----------------------MLA---- 417
++ E+ +V++ + D NE ML
Sbjct: 92 QGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLVFERV 151
Query: 418 ----------------RVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCAS 461
R+L+ SNQ+GC+LGKGGS+I M SGA IRIL K++IP CAS
Sbjct: 152 AEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIPACAS 211
Query: 462 ENEEVIQITGEIEAVHDALLQITTRLKHHFFRD 494
+++E++QITG +E V AL + +L + RD
Sbjct: 212 DSDELVQITGGVEVVRRALQSVFQQLVENSPRD 244
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 28 LDAAAGGVVFRMLCPATRXXXXXXXXXXXXSQIRQETGVNIKIDEPTPGCDERVIIF 84
LD ++ VVFR+LCPA++ SQIR ETGV +KI+EP PGC+ERVI F
Sbjct: 26 LDVSSS-VVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITF 81
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 247 bits (630), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 192/555 (34%), Positives = 288/555 (51%), Gaps = 60/555 (10%)
Query: 159 RKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAES 218
++AL VF+R+++ +DG+ + S RLL+ + Q G ++GKGG V+ K+ A++
Sbjct: 84 QEALLKVFERILDVAAAESDGNGVGDRVVSC--RLLVNAGQAGGVIGKGGMVVAKIRADT 141
Query: 219 GAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRD---------H 269
G +IR+L DKLP C SDEI++I G V+KAL +V+ +L + PP D +
Sbjct: 142 GCRIRVL-NDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQDCPPLDRTKMMGTRPY 200
Query: 270 ESLSTNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPS--- 326
E+ + + TS S + SK H ++ S
Sbjct: 201 EAFQNETSAVPHEGLTDLNMDFRLQRSSAISTSSIRSN-GVPSKSHPLSVEDNRVSSLDP 259
Query: 327 ---QEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPA 383
++ +TFR+LC +++G ++GKGG+I+K++Q ET + I V V + ED +I I+
Sbjct: 260 EALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVECEDRLITITALE 319
Query: 384 HPDDRISPVQEAVFRVQNR-VARAIPDV------NEHSMLARVLVSSNQIGCLLGKGGSI 436
+P+ R SP QEAV V R + I V E S+ A+++V SNQ+G LLGKGG+I
Sbjct: 320 NPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGGAI 379
Query: 437 ITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAY 496
++EMRK + IRI ++PKCAS N++V+QI+GE+ V DAL T RL+ H F A
Sbjct: 380 VSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLIAQ 439
Query: 497 PSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPFMNNIHRS 556
S D++P LG G S G S+ G P H+ D N RS
Sbjct: 440 NSGGTGPYRRPRDSIP-----LGLGGQSVVG--SNHG-PSIHSLSQSMDHLTLSRNSGRS 491
Query: 557 GIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRI--------LGFGG----GNQPII 604
A W P+ + GG + D AG RR+ L G GN II
Sbjct: 492 ------ASSGVWAPKVV--GGKNSRYTDDAG---RRLNPREGDLELASGSNTVIGNAAII 540
Query: 605 THTSATXXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVE-TKIIISGTPE 663
T+T T +YGE+G L Q+ QIS AK++ +P+PG + KI++SGTP+
Sbjct: 541 TNT--TVEIMLPNDIIGSVYGENGSNLDQLRQISGAKVVFHEPRPGTSDRAKIVLSGTPD 598
Query: 664 QTHAAQSLIQAFVMS 678
+T AAQSL+QA++++
Sbjct: 599 ETQAAQSLLQAYILN 613
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 8/166 (4%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ FRLLC A ++G IGK G++IKS+QQ T + I++ DA D + VIV+ + D +
Sbjct: 20 VVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDGDV 79
Query: 390 SPV-QEAVFRVQNR---VARAIPD---VNEHSMLARVLVSSNQIGCLLGKGGSIITEMRK 442
S QEA+ +V R VA A D V + + R+LV++ Q G ++GKGG ++ ++R
Sbjct: 80 SLNPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAKIRA 139
Query: 443 LSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+G IR+L DK+P C ++E+I+I G +V AL+ + RL+
Sbjct: 140 DTGCRIRVL-NDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQ 184
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 209 bits (532), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 198/344 (57%), Gaps = 22/344 (6%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
AL VF+R+VE + + SS RLL S QVGC+LG+GG +++K+ ESGA
Sbjct: 74 ALIRVFERIVE---KDNNEENNKKSNSSVGCRLLAPSYQVGCVLGRGGKIVEKIRQESGA 130
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXX 280
Q+RILPKD P+ DE +QITG V+KAL +VS L +N +G
Sbjct: 131 QVRILPKDHSPI-PPPGDEFIQITGNFNAVKKALLAVSSCLQDN---------VGNSGGF 180
Query: 281 XXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEK 340
P D HS E A +E + +++LC +K
Sbjct: 181 KSSGGAQVEPYPQRGPHPPD---HHSRGYSSFPGSENARPAHRMFVEEEVVYKMLCQQDK 237
Query: 341 VGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQ 400
VG+LIGKGG++++++Q ET + I+++DA PDS++ V+VIS + D + SP Q+AV RV
Sbjct: 238 VGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVISALENSDQKHSPAQDAVIRVH 297
Query: 401 NRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCA 460
R+ I + ++++AR+LV S Q+GCLLGKGG +I+EMR+++GA+IRI K++I K
Sbjct: 298 GRLTE-IGFEHSNAVVARLLVRSPQVGCLLGKGGHVISEMRRVTGANIRIFSKEQI-KYI 355
Query: 461 SENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSN 504
S NEEV+Q+ G +++V DAL IT+R++ P N P N
Sbjct: 356 SHNEEVVQVIGTLQSVQDALFHITSRIRETII----PMKNTPPN 395
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 325 PSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAH 384
P+Q FR+LCPA K +L+ G +K + + A ++ S D IV+ A
Sbjct: 13 PTQPDTVFRILCPAAKSDSLLSLSGDGVKILIDDFAGDVT-------SSDERIVVIISA- 64
Query: 385 PDDRISPVQEAVFRVQNRVAR-----AIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITE 439
S Q A+ RV R+ + S+ R+L S Q+GC+LG+GG I+ +
Sbjct: 65 -AAEESAAQLALIRVFERIVEKDNNEENNKKSNSSVGCRLLAPSYQVGCVLGRGGKIVEK 123
Query: 440 MRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+R+ SGA +RIL KD P +E IQITG AV ALL +++ L+
Sbjct: 124 IRQESGAQVRILPKDHSP-IPPPGDEFIQITGNFNAVKKALLAVSSCLQ 171
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 623 IYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVM 677
+YGE+ L QI QIS A ++I DP PGA E +I+SGT +Q H+AQ LIQ F+
Sbjct: 545 VYGENNSTLNQIRQISGANVVIHDPIPGATEGLVIVSGTQDQIHSAQCLIQGFIF 599
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 12/110 (10%)
Query: 155 HSAIRKALSLVFDRMVE-GVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKK 213
HS + A+ V R+ E G E +++ V RLL+ S QVGCLLGKGG VI +
Sbjct: 286 HSPAQDAVIRVHGRLTEIGFE----------HSNAVVARLLVRSPQVGCLLGKGGHVISE 335
Query: 214 MSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLE 263
M +GA IRI K+++ S ++E+VQ+ G ++ V+ AL ++ ++ E
Sbjct: 336 MRRVTGANIRIFSKEQIKYI-SHNEEVVQVIGTLQSVQDALFHITSRIRE 384
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 199/353 (56%), Gaps = 14/353 (3%)
Query: 170 VEGVEDTADGDEESGKASSFVF-RLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKD 228
+ GVED D D E V +LL+ S+Q+GC++GKGG +++ + +E+GAQIRIL D
Sbjct: 134 LRGVED-EDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDD 192
Query: 229 KLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXX 288
+LP+CA SDE+VQI+G + VV+KAL V+ +L +NP R L++ G
Sbjct: 193 RLPLCALNSDELVQISGEIAVVKKALIQVAARLHDNPSRTQHLLTSAVPGVYAASGSMVG 252
Query: 289 XXXXX--FAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEKVGNLIG 346
P ++ R S + + R +CP +G +IG
Sbjct: 253 SHGGAPIMGMAPIGGGYGGYKGDVVDYPRSMYPGSRDEGSVKEFSVRFVCPTANIGGVIG 312
Query: 347 KGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARA 406
KGG II ++Q++ + IKV + + +DC+I IS +D S EA +Q R +
Sbjct: 313 KGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSEK 372
Query: 407 IP-DVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEE 465
+ D S +R+LVSS++IGCL+GKGGSIITEMR+L+ A+IRIL K+ +PK A+E++E
Sbjct: 373 VERDSGILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDE 432
Query: 466 VIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYL 518
++QI+GE++ DALLQ+ TRL+ + F ++ LPP L YL
Sbjct: 433 MVQISGELDIAKDALLQVLTRLRANLFDKERSVSSL---------LPPVLAYL 476
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 111/197 (56%), Gaps = 25/197 (12%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
+Q+ +R LCP K+G++IG+GG I+K ++ +T ++I++ + VP ++ V+ + +
Sbjct: 45 TQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDE 104
Query: 386 DDR-------ISPVQEAVFRVQNRV----ARAIPDVNEHS--------MLARVLVSSNQI 426
+ + P +A+ R+ +V R + D + + A++LV+S+QI
Sbjct: 105 SNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQI 164
Query: 427 GCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTR 486
GC++GKGG I+ +R +GA IRIL D++P CA ++E++QI+GEI V AL+Q+ R
Sbjct: 165 GCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAAR 224
Query: 487 L------KHHFFRDAYP 497
L H A P
Sbjct: 225 LHDNPSRTQHLLTSAVP 241
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 199/353 (56%), Gaps = 14/353 (3%)
Query: 170 VEGVEDTADGDEESGKASSFVF-RLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKD 228
+ GVED D D E V +LL+ S+Q+GC++GKGG +++ + +E+GAQIRIL D
Sbjct: 134 LRGVED-EDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDD 192
Query: 229 KLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXX 288
+LP+CA SDE+VQI+G + VV+KAL V+ +L +NP R L++ G
Sbjct: 193 RLPLCALNSDELVQISGEIAVVKKALIQVAARLHDNPSRTQHLLTSAVPGVYAASGSMVG 252
Query: 289 XXXXX--FAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEKVGNLIG 346
P ++ R S + + R +CP +G +IG
Sbjct: 253 SHGGAPIMGMAPIGGGYGGYKGDVVDYPRSMYPGSRDEGSVKEFSVRFVCPTANIGGVIG 312
Query: 347 KGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARA 406
KGG II ++Q++ + IKV + + +DC+I IS +D S EA +Q R +
Sbjct: 313 KGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSEK 372
Query: 407 IP-DVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEE 465
+ D S +R+LVSS++IGCL+GKGGSIITEMR+L+ A+IRIL K+ +PK A+E++E
Sbjct: 373 VERDSGILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDE 432
Query: 466 VIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYL 518
++QI+GE++ DALLQ+ TRL+ + F ++ LPP L YL
Sbjct: 433 MVQISGELDIAKDALLQVLTRLRANLFDKERSVSSL---------LPPVLAYL 476
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 111/197 (56%), Gaps = 25/197 (12%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
+Q+ +R LCP K+G++IG+GG I+K ++ +T ++I++ + VP ++ V+ + +
Sbjct: 45 TQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDE 104
Query: 386 DDR-------ISPVQEAVFRVQNRV----ARAIPDVNEHS--------MLARVLVSSNQI 426
+ + P +A+ R+ +V R + D + + A++LV+S+QI
Sbjct: 105 SNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQI 164
Query: 427 GCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTR 486
GC++GKGG I+ +R +GA IRIL D++P CA ++E++QI+GEI V AL+Q+ R
Sbjct: 165 GCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAAR 224
Query: 487 L------KHHFFRDAYP 497
L H A P
Sbjct: 225 LHDNPSRTQHLLTSAVP 241
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 218/427 (51%), Gaps = 62/427 (14%)
Query: 156 SAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMS 215
S ++AL VFDR++E V +G E + S RL+ S Q G ++GKGG V++K+
Sbjct: 122 SKAQEALLRVFDRILE-VAAEMEGIELGDRTVSC--RLVADSAQAGSVIGKGGKVVEKIK 178
Query: 216 AESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTN 275
++G +I + KD LP C S+ DE+++I G V V+KAL +VS L + H + T
Sbjct: 179 KDTGCKIWVC-KDNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQDR----HHADRTK 233
Query: 276 FTGXXXXX------------XXXXXXXXXXFAAGP------------TDTSVFH-----S 306
TG F P TD V H S
Sbjct: 234 MTGQNSHEVIHHEALVGVPRETLMSVPRETFIGAPRETLTAVPCETLTDLHVDHLLQRRS 293
Query: 307 APSLI---SKFHEGAIHG---------RMRPS--QEMLTFRLLCPAEKVGNLIGKGGAII 352
A S++ S + +H + P Q+ +TF+++C +++G +IGKGG II
Sbjct: 294 ALSILPSSSNSYATGVHSLSAEVNRVSSLEPKAHQQEITFKIICSNDRIGGVIGKGGNII 353
Query: 353 KSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARAIPD--- 409
+++Q ET + + V +V + ED +I I+ P+ R SP Q+A V +R A +
Sbjct: 354 RALQSETGATVSVGPSVAECEDRLITITASESPESRYSPAQKATVLVFSRSVEAGIEKGI 413
Query: 410 ---VNE-HSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEE 465
+N S+ A+++VSSNQ+GCLLGKGG I++EMRK +GA IRI+G DK+ KCAS+N++
Sbjct: 414 DSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMRKATGASIRIVGTDKVSKCASDNDQ 473
Query: 466 VIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISP 525
V+QI+GE V DAL T RL+ + F SA S + + P+ GR P
Sbjct: 474 VVQISGEFSNVQDALYNATGRLRDNLFGGTLKSAGTRSLSSVQSDTSPY----GRLRDVP 529
Query: 526 PGMYSDL 532
G S L
Sbjct: 530 LGSQSSL 536
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 106/192 (55%), Gaps = 22/192 (11%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDR- 388
+ FRLLC + ++G +IGK G +IK++Q T ++I++ D+ +S D VI++ G ++ D +
Sbjct: 48 VAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKV 107
Query: 389 -------------ISPVQEAVFRVQNRVARAIPDVN-----EHSMLARVLVSSNQIGCLL 430
+S QEA+ RV +R+ ++ + ++ R++ S Q G ++
Sbjct: 108 MVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGSVI 167
Query: 431 GKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRL--K 488
GKGG ++ +++K +G I + KD +P C S +EVI+I G + +V AL+ ++ L +
Sbjct: 168 GKGGKVVEKIKKDTGCKIWVC-KDNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQDR 226
Query: 489 HHFFRDAYPSAN 500
HH R N
Sbjct: 227 HHADRTKMTGQN 238
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 155 HSAIRKALSLVFDRMVE-GVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKK 213
+S +KA LVF R VE G+E D +G SS +L++ SNQVGCLLGKGG ++ +
Sbjct: 390 YSPAQKATVLVFSRSVEAGIEKGIDSGLNTG--SSVTAQLVVSSNQVGCLLGKGGVIVSE 447
Query: 214 MSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLEN 264
M +GA IRI+ DK+ CAS +D++VQI+G V+ AL + + +L +N
Sbjct: 448 MRKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDN 498
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 45/56 (80%)
Query: 623 IYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMS 678
+YGE+G L ++ QIS AK++I +P+PG + I++SG+P++T AAQSL+QAF+++
Sbjct: 708 VYGENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPDETQAAQSLLQAFILN 763
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 207/368 (56%), Gaps = 29/368 (7%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
AL + DR+V ED EE G +LL+ S+Q+GC+LGKGG +++ + +E+GA
Sbjct: 119 ALFKIHDRVV--AEDLHSDQEEEG-GPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGA 175
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXX 280
QIRIL D +P CA SDE+VQI+G VV+KAL ++ +L NP R + + G
Sbjct: 176 QIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSR-----TQHLLGSA 230
Query: 281 XXXXXXXXXXXXXFAAGPTDTSV------FHSAPSLISKFHEGAIHGRMR---PSQEMLT 331
AGP + + S + +++ R S + +
Sbjct: 231 VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFS 290
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
RL+CP +G +IGKGG II ++Q++ + IKV D+ +DC+I IS ++ SP
Sbjct: 291 VRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEETFSP 349
Query: 392 VQEAVFRVQNRVA-RAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRI 450
EA +Q R + ++ D S R+LVSS++IGCL+GKGGSIITEMR+L+ ++IRI
Sbjct: 350 TVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRI 409
Query: 451 LGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSNPAFLDN 510
L K+ +PK AS+++E++QI+G+++ DAL+Q+ TRL+ + F + P FL
Sbjct: 410 LSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLF------DREGAVPGFL-- 461
Query: 511 LPPFLPYL 518
P LPY+
Sbjct: 462 --PVLPYI 467
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 38/244 (15%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
++E FR LCP K+G++IG+GG I+K ++ ET ++I++ + VP ++ V+ + +
Sbjct: 43 NKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDE 102
Query: 386 -------DDRISPVQEAVFRVQNRVA----------RAIPDVNEHSMLARVLVSSNQIGC 428
D +SP ++A+F++ +RV P VN A++LV S+QIGC
Sbjct: 103 TNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVN-----AKLLVPSDQIGC 157
Query: 429 LLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+LGKGG I+ +R +GA IRIL D +P CA ++E++QI+G+ V AL QI +RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 489 H------HFFRDAYPSANYPSNPAFLDNL--PPFL---PYLGRRGISPPGMYSDLGPPPP 537
H H A PS YPS + + PP + P +G G G SD G PP
Sbjct: 218 HNPSRTQHLLGSAVPSV-YPSGGSLMGPTAGPPIVGMAPLVGPYG----GYKSDTGDWPP 272
Query: 538 HAGF 541
+ +
Sbjct: 273 RSMY 276
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 209/369 (56%), Gaps = 31/369 (8%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
AL + DR+V ED EE G +LL+ S+Q+GC+LGKGG +++ + +E+GA
Sbjct: 119 ALFKIHDRVV--AEDLHSDQEEEG-GPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGA 175
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXX 280
QIRIL D +P CA SDE+VQI+G VV+KAL ++ +L NP R + + G
Sbjct: 176 QIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSR-----TQHLLGSA 230
Query: 281 XXXXXXXXXXXXXFAAGPTDTSV------FHSAPSLISKFHEGAIHGRMR---PSQEMLT 331
AGP + + S + +++ R S + +
Sbjct: 231 VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFS 290
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
RL+CP +G +IGKGG II ++Q++ + IKV D+ +DC+I IS ++ SP
Sbjct: 291 VRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEETFSP 349
Query: 392 VQEAVFRVQNRVA-RAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRI 450
EA +Q R + ++ D S R+LVSS++IGCL+GKGGSIITEMR+L+ ++IRI
Sbjct: 350 TVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRI 409
Query: 451 LGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF-RDAYPSANYPSNPAFLD 509
L K+ +PK AS+++E++QI+G+++ DAL+Q+ TRL+ + F R+ + P FL
Sbjct: 410 LSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREG-------AVPGFL- 461
Query: 510 NLPPFLPYL 518
P LPY+
Sbjct: 462 ---PVLPYI 467
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 38/244 (15%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
++E FR LCP K+G++IG+GG I+K ++ ET ++I++ + VP ++ V+ + +
Sbjct: 43 NKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDE 102
Query: 386 -------DDRISPVQEAVFRVQNRVA----------RAIPDVNEHSMLARVLVSSNQIGC 428
D +SP ++A+F++ +RV P VN A++LV S+QIGC
Sbjct: 103 TNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVN-----AKLLVPSDQIGC 157
Query: 429 LLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+LGKGG I+ +R +GA IRIL D +P CA ++E++QI+G+ V AL QI +RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 489 H------HFFRDAYPSANYPSNPAFLDNL--PPFL---PYLGRRGISPPGMYSDLGPPPP 537
H H A PS YPS + + PP + P +G G G SD G PP
Sbjct: 218 HNPSRTQHLLGSAVPSV-YPSGGSLMGPTAGPPIVGMAPLVGPYG----GYKSDTGDWPP 272
Query: 538 HAGF 541
+ +
Sbjct: 273 RSMY 276
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 209/369 (56%), Gaps = 31/369 (8%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
AL + DR+V ED EE G +LL+ S+Q+GC+LGKGG +++ + +E+GA
Sbjct: 119 ALFKIHDRVV--AEDLHSDQEEEG-GPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGA 175
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXX 280
QIRIL D +P CA SDE+VQI+G VV+KAL ++ +L NP R + + G
Sbjct: 176 QIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSR-----TQHLLGSA 230
Query: 281 XXXXXXXXXXXXXFAAGPTDTSV------FHSAPSLISKFHEGAIHGRMR---PSQEMLT 331
AGP + + S + +++ R S + +
Sbjct: 231 VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFS 290
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
RL+CP +G +IGKGG II ++Q++ + IKV D+ +DC+I IS ++ SP
Sbjct: 291 VRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEETFSP 349
Query: 392 VQEAVFRVQNRVA-RAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRI 450
EA +Q R + ++ D S R+LVSS++IGCL+GKGGSIITEMR+L+ ++IRI
Sbjct: 350 TVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRI 409
Query: 451 LGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF-RDAYPSANYPSNPAFLD 509
L K+ +PK AS+++E++QI+G+++ DAL+Q+ TRL+ + F R+ + P FL
Sbjct: 410 LSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREG-------AVPGFL- 461
Query: 510 NLPPFLPYL 518
P LPY+
Sbjct: 462 ---PVLPYI 467
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 38/244 (15%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
++E FR LCP K+G++IG+GG I+K ++ ET ++I++ + VP ++ V+ + +
Sbjct: 43 NKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDE 102
Query: 386 -------DDRISPVQEAVFRVQNRVA----------RAIPDVNEHSMLARVLVSSNQIGC 428
D +SP ++A+F++ +RV P VN A++LV S+QIGC
Sbjct: 103 TNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVN-----AKLLVPSDQIGC 157
Query: 429 LLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+LGKGG I+ +R +GA IRIL D +P CA ++E++QI+G+ V AL QI +RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 489 H------HFFRDAYPSANYPSNPAFLDNL--PPFL---PYLGRRGISPPGMYSDLGPPPP 537
H H A PS YPS + + PP + P +G G G SD G PP
Sbjct: 218 HNPSRTQHLLGSAVPSV-YPSGGSLMGPTAGPPIVGMAPLVGPYG----GYKSDTGDWPP 272
Query: 538 HAGF 541
+ +
Sbjct: 273 RSMY 276
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 209/369 (56%), Gaps = 31/369 (8%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
AL + DR+V ED EE G +LL+ S+Q+GC+LGKGG +++ + +E+GA
Sbjct: 119 ALFKIHDRVV--AEDLHSDQEEEG-GPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGA 175
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXX 280
QIRIL D +P CA SDE+VQI+G VV+KAL ++ +L NP R + + G
Sbjct: 176 QIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSR-----TQHLLGSA 230
Query: 281 XXXXXXXXXXXXXFAAGPTDTSV------FHSAPSLISKFHEGAIHGRMR---PSQEMLT 331
AGP + + S + +++ R S + +
Sbjct: 231 VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFS 290
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
RL+CP +G +IGKGG II ++Q++ + IKV D+ +DC+I IS ++ SP
Sbjct: 291 VRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEETFSP 349
Query: 392 VQEAVFRVQNRVA-RAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRI 450
EA +Q R + ++ D S R+LVSS++IGCL+GKGGSIITEMR+L+ ++IRI
Sbjct: 350 TVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRI 409
Query: 451 LGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF-RDAYPSANYPSNPAFLD 509
L K+ +PK AS+++E++QI+G+++ DAL+Q+ TRL+ + F R+ + P FL
Sbjct: 410 LSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREG-------AVPGFL- 461
Query: 510 NLPPFLPYL 518
P LPY+
Sbjct: 462 ---PVLPYI 467
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 38/244 (15%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
++E FR LCP K+G++IG+GG I+K ++ ET ++I++ + VP ++ V+ + +
Sbjct: 43 NKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDE 102
Query: 386 -------DDRISPVQEAVFRVQNRVA----------RAIPDVNEHSMLARVLVSSNQIGC 428
D +SP ++A+F++ +RV P VN A++LV S+QIGC
Sbjct: 103 TNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVN-----AKLLVPSDQIGC 157
Query: 429 LLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+LGKGG I+ +R +GA IRIL D +P CA ++E++QI+G+ V AL QI +RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 489 H------HFFRDAYPSANYPSNPAFLDNL--PPFL---PYLGRRGISPPGMYSDLGPPPP 537
H H A PS YPS + + PP + P +G G G SD G PP
Sbjct: 218 HNPSRTQHLLGSAVPSV-YPSGGSLMGPTAGPPIVGMAPLVGPYG----GYKSDTGDWPP 272
Query: 538 HAGF 541
+ +
Sbjct: 273 RSMY 276
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 170 bits (430), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 40/390 (10%)
Query: 156 SAIRKALSLVFDRMVE---GVEDTADGDEESGKASSFVF-RLLILSNQVGCLLGKGGSVI 211
S ++AL L+ +R++E G ED D G V RL++ VG LLGKGG +I
Sbjct: 128 SPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKGGKII 187
Query: 212 KKMSAESGAQIRILPKDK-LPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHE 270
++M E+ QIRILP+D LP C S S+EIVQ+TG + V+ A +S +L E+ RD
Sbjct: 188 EQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRESQHRDRS 247
Query: 271 SLST---------------------NFTGXXXXXXXXXXXXXXXFAAG-PTDTSVFHSAP 308
++ F + T S ++
Sbjct: 248 GERGGGGGQFHGRGHSPERFFPPDDDYLPHVSSGSRRPSVERSGFGSRIATTNSRNNNHA 307
Query: 309 SLISKFHEGA--IHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVI 366
S+ +GA + +P E L FR+LCP ++V ++G+ G I++ +Q ++++
Sbjct: 308 SISYSMDQGAAPVAHDEQPFYEDLIFRILCPVDRVDRIVGESGGILELLQDRVGVDVQIS 367
Query: 367 DAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQI 426
D V S++ +++I+ P+D + P QEA+ +Q + D+++ + R++V S+ I
Sbjct: 368 DRVGGSDEQMVIITSEEGPNDTMFPAQEALLHIQTHIV----DLSDSIITTRLIVPSSDI 423
Query: 427 GCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTR 486
CL GK S ++E+ + +GA ++IL ++++P C + +E++QI GEIEA + +L +T +
Sbjct: 424 ECLDGKNAS-LSEIERSTGASVQILPREELPPCIANTDELVQIVGEIEAARNVILDVTAK 482
Query: 487 LKHHFFRDAY------PSANYPSNPAFLDN 510
L+ + +RD PSA PS A N
Sbjct: 483 LRSYVYRDILQWDTVPPSAPLPSVEASSSN 512
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 18/182 (9%)
Query: 331 TFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAH--PDDR 388
++RLLC + G +IGK G+IIKS++Q T + I V + V E+ +I IS PD R
Sbjct: 64 SYRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGR 123
Query: 389 I---SPVQEAVFRVQNRVARAIPDVNEHS------------MLARVLVSSNQIGCLLGKG 433
+ SP QEA+ + R+ P + + +R++VS +G LLGKG
Sbjct: 124 MPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKG 183
Query: 434 GSIITEMRKLSGAHIRILGKDK-IPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF 492
G II +MR + IRIL +D +P+C S +EE++Q+TG+I V +A L I++RL+
Sbjct: 184 GKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRESQH 243
Query: 493 RD 494
RD
Sbjct: 244 RD 245
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 180/318 (56%), Gaps = 19/318 (5%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
AL + DR+V ED EE G +LL+ S+Q+GC+LGKGG +++ + +E+GA
Sbjct: 119 ALFKIHDRVV--AEDLHSDQEEEG-GPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGA 175
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXX 280
QIRIL D +P CA SDE+VQI+G VV+KAL ++ +L NP R + + G
Sbjct: 176 QIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHNPSR-----TQHLLGSA 230
Query: 281 XXXXXXXXXXXXXFAAGPTDTSV------FHSAPSLISKFHEGAIHGRMR---PSQEMLT 331
AGP + + S + +++ R S + +
Sbjct: 231 VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFS 290
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
RL+CP +G +IGKGG II ++Q++ + IKV D+ +DC+I IS ++ SP
Sbjct: 291 VRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEETFSP 349
Query: 392 VQEAVFRVQNRVA-RAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRI 450
EA +Q R + ++ D S R+LVSS++IGCL+GKGGSIITEMR+L+ ++IRI
Sbjct: 350 TVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRI 409
Query: 451 LGKDKIPKCASENEEVIQ 468
L K+ +PK AS+++E++Q
Sbjct: 410 LSKENLPKIASDDDEMVQ 427
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 38/244 (15%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
++E FR LCP K+G++IG+GG I+K ++ ET ++I++ + VP ++ V+ + +
Sbjct: 43 NKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDE 102
Query: 386 -------DDRISPVQEAVFRVQNRVA----------RAIPDVNEHSMLARVLVSSNQIGC 428
D +SP ++A+F++ +RV P VN A++LV S+QIGC
Sbjct: 103 TNTVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVN-----AKLLVPSDQIGC 157
Query: 429 LLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+LGKGG I+ +R +GA IRIL D +P CA ++E++QI+G+ V AL QI +RL
Sbjct: 158 VLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLH 217
Query: 489 H------HFFRDAYPSANYPSNPAFLDNL--PPFL---PYLGRRGISPPGMYSDLGPPPP 537
H H A PS YPS + + PP + P +G G G SD G PP
Sbjct: 218 HNPSRTQHLLGSAVPSV-YPSGGSLMGPTAGPPIVGMAPLVGPYG----GYKSDTGDWPP 272
Query: 538 HAGF 541
+ +
Sbjct: 273 RSMY 276
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 156/548 (28%), Positives = 249/548 (45%), Gaps = 100/548 (18%)
Query: 179 GDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLP---VCAS 235
GD E + + ++L+ S+Q L+GK G+ IK++ ++ I+++PKD CA
Sbjct: 135 GDSEKKRKNKDECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAM 194
Query: 236 ASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXXXXXXXFA 295
D V + G E V++AL +VS + + P++ L T T +
Sbjct: 195 EFDNFV-LVGESEAVKRALFAVSTIMYKFSPKEDIPLDT--TVPETPHSIIIPSELPIYP 251
Query: 296 AG---PTDTSVFH--SAPSLISKFHEGAIHG--------------------RMRPSQ-EM 329
G P + S P LI +HG + SQ E
Sbjct: 252 PGGLYPASDPIVQPRSFPQLIGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLGASQSEE 311
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
L R+LCP++K+G LIGKGG IK ++Q + + I+V D+ ++C+I I+ D
Sbjct: 312 LIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLK 371
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIR 449
S EAV +Q + I D ++ + R+LV S IGC++G+ G+II E+RK + A I+
Sbjct: 372 SVAVEAVLLLQEK----INDEDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQ 427
Query: 450 ILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDA-------------Y 496
I +K PK A +N+E++++ GE++ V DAL+QI RL+ ++ Y
Sbjct: 428 ISRSNK-PKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHNRHIGSESLY 486
Query: 497 PSANYPSNPAFLDNLP---PFLPYLGRRGI-SPPGMYSDLGPPPPHAGFPLDDRPPFMNN 552
S++ S P L ++P P L Y R G + GM+S H G+ D +N
Sbjct: 487 ASSSVLSAPPMLSSIPATAPALAYDQRTGSGTGLGMHSSRS----HYGY---DSYSMEDN 539
Query: 553 IH--RSGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSAT 610
+ S ++ E P LE M +P A G +++G GG N
Sbjct: 540 GYGSMSSYATNLYEGHRLPPLSTLE----MVVPANAVG---KVMGKGGAN---------- 582
Query: 611 XXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQS 670
L I +IS A + I++ K + +ISGT E+ AA++
Sbjct: 583 --------------------LANIRKISGATVEISESKSYRGDRVALISGTSEEKRAAEN 622
Query: 671 LIQAFVMS 678
LIQAF+M+
Sbjct: 623 LIQAFIMA 630
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 35/256 (13%)
Query: 324 RPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPA 383
R E++ +R+LCP E +G++IGK G +I S++QE+ +++KV+D P ++ VI I
Sbjct: 36 RDKGELIAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIF--C 93
Query: 384 HPDDR--------------ISPVQEAVFRVQNRVARAIPDVNEHSMLAR------VLVSS 423
H ++ + Q+A+ +V + ++ +I + + +LV S
Sbjct: 94 HVKNKEEIEIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPS 153
Query: 424 NQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIP---KCASENEEVIQITGEIEAVHDAL 480
+Q L+GK G+ I ++R + +I+++ KD CA E + + + GE EAV AL
Sbjct: 154 SQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFV-LVGESEAVKRAL 212
Query: 481 LQITTRLKHHFFRDAYP-SANYPSNPAFLDNLPPFLPYLGRRGISPP-GMYSDLGPPPPH 538
++T + ++ P P P + +P LP I PP G+Y P
Sbjct: 213 FAVSTIMYKFSPKEDIPLDTTVPETPHSI-IIPSELP------IYPPGGLYPASDPIVQP 265
Query: 539 AGFPLDDRPPFMNNIH 554
FP M ++H
Sbjct: 266 RSFPQLIGATTMQDLH 281
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 149/535 (27%), Positives = 242/535 (45%), Gaps = 72/535 (13%)
Query: 165 VFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRI 224
VFDR V G+E G+ E +LL S+QVG ++GKGG I + SG+ IR+
Sbjct: 117 VFDR-VWGLESEKGGNGE------VYGKLLAHSSQVGAIVGKGGKNISNIRNNSGSNIRV 169
Query: 225 LPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXX 284
P P CA+ +E++ ITG V+KAL VS L + PP SL+T T
Sbjct: 170 CPA---PHCAAKDEELILITGESLAVKKALIYVSYCLQDCPPMGKVSLNTPPT-INSSDR 225
Query: 285 XXXXXXXXXF----AAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEK 340
F + P+ + + S + G + S + FRLLC
Sbjct: 226 STSYTHEDLFPHLNSWLPSMEGLSINDASKQTTNANGNSSLDSKGSGHAVVFRLLCSNNV 285
Query: 341 VGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQ 400
G++IGK G+I+++ + T + I + E+ ++ IS + + SP Q+AV V
Sbjct: 286 AGSVIGKKGSIVRTFEIRTGASIVFAPPLGQYEERIVTISAFENLESSNSPAQDAVILVF 345
Query: 401 NRVAR-------AIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGK 453
R+A E + AR+L++++ + L G G +I+E+R++SGA I++L
Sbjct: 346 TRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELRQVSGADIQLLHG 405
Query: 454 DKIPKCASENEEVIQITGEIEAVHDALLQITTRLK-----HHFFRDAYPSANYPSNPAFL 508
+ IP AS+N+ V+QITG V +AL +IT+ ++ + +A ++P N +
Sbjct: 406 EPIPN-ASDNDVVVQITGGYRCVENALRKITSIIRDNPLTNELLAEAKIKPSFPLNKDTV 464
Query: 509 DNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPFMNNIHRSGIPPHIAERKPW 568
+ ++ R+ + FP PP ++++ E
Sbjct: 465 RS-----KFITRK----------------KSSFPFARVPPQNAGVYQAKKVTENGESHTN 503
Query: 569 GPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATXXXXXXXXXXXXIYGEDG 628
+ + G G++ + T T+ T +YGEDG
Sbjct: 504 LIENVEPGRGNI----------------------VATVTNTTVEIIVSEHVFGSVYGEDG 541
Query: 629 ECLRQILQISDAKIMITDP-KPGAVETKIIISGTPEQTHAAQSLIQAFVMSERDS 682
L +I QIS A + + DP G K++ISGTP+QT AAQSL+QAF+ + + S
Sbjct: 542 GNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFIQTAQAS 596
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 320 HGRMRPSQEML----TFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDC 375
+ R RP ++L FRL+C + VG LIG G+I+ +++ET +I DAV ++D
Sbjct: 25 NNRKRPVFKLLPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDR 84
Query: 376 VIVISGPAHP------DDR---ISPVQEAVFRVQNRVARAIPDVNEH-SMLARVLVSSNQ 425
VI++ G DR +S QE V RV +RV + + + ++L S+Q
Sbjct: 85 VILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYGKLLAHSSQ 144
Query: 426 IGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITT 485
+G ++GKGG I+ +R SG++IR+ P CA+++EE+I ITGE AV AL+ ++
Sbjct: 145 VGAIVGKGGKNISNIRNNSGSNIRVC---PAPHCAAKDEELILITGESLAVKKALIYVSY 201
Query: 486 RLK 488
L+
Sbjct: 202 CLQ 204
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 155 HSAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVF-RLLILSNQVGCLLGKGGSVIKK 213
+S + A+ LVF R+ E + +G + + S V RLLI ++ + L G G VI +
Sbjct: 334 NSPAQDAVILVFTRIAE--DHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISE 391
Query: 214 MSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENP 265
+ SGA I++L + +P AS +D +VQITGG V AL+ ++ + +NP
Sbjct: 392 LRQVSGADIQLLHGEPIP-NASDNDVVVQITGGYRCVENALRKITSIIRDNP 442
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 188/389 (48%), Gaps = 52/389 (13%)
Query: 179 GDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLP---VCAS 235
GD E + + ++L+ S+Q L+GK G+ IK++ ++ I+++PKD CA
Sbjct: 135 GDSEKKRKNKDECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAM 194
Query: 236 ASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXXXXXXXFA 295
D V ITG E V++AL +VS + + P++ L T T +
Sbjct: 195 EFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDT--TVPETPHSIIIPSELPIYP 252
Query: 296 AG---PTDTSVFH--SAPSLISKFHEGAIHG--------------------RMRPSQ-EM 329
G P + S P LI +HG + SQ E
Sbjct: 253 PGGLYPASDPIVQPRSFPQLIGATTMQDLHGGYADTGNTWPLYSSPLPVVSSLGASQSEE 312
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
L R+LCP++K+G LIGKGG IK ++Q + + I+V D+ ++C+I I+ D
Sbjct: 313 LIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLK 372
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIR 449
S EAV +Q + I D ++ + R+LV S IGC++G+ G+II E+RK + A I+
Sbjct: 373 SVAVEAVLLLQEK----INDEDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQ 428
Query: 450 ILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDA-------------Y 496
I +K PK A +N+E++++ GE++ V DAL+QI RL+ ++ Y
Sbjct: 429 ISRSNK-PKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHNRHIGSESLY 487
Query: 497 PSANYPSNPAFLDNLP---PFLPYLGRRG 522
S++ S P L ++P P L Y R G
Sbjct: 488 ASSSVLSAPPMLSSIPATAPALAYDQRTG 516
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 34/256 (13%)
Query: 324 RPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPA 383
R E++ +R+LCP E +G++IGK G +I S++QE+ +++KV+D P ++ VI I
Sbjct: 36 RDKGELIAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIF--C 93
Query: 384 HPDDR--------------ISPVQEAVFRVQNRVARAIPDVNEHSMLAR------VLVSS 423
H ++ + Q+A+ +V + ++ +I + + +LV S
Sbjct: 94 HVKNKEEIEIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPS 153
Query: 424 NQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIP---KCASENEEVIQITGEIEAVHDAL 480
+Q L+GK G+ I ++R + +I+++ KD CA E + + ITGE EAV AL
Sbjct: 154 SQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRAL 213
Query: 481 LQITTRLKHHFFRDAYP-SANYPSNPAFLDNLPPFLPYLGRRGISPP-GMYSDLGPPPPH 538
++T + ++ P P P + +P LP I PP G+Y P
Sbjct: 214 FAVSTIMYKFSPKEDIPLDTTVPETPHSII-IPSELP------IYPPGGLYPASDPIVQP 266
Query: 539 AGFPLDDRPPFMNNIH 554
FP M ++H
Sbjct: 267 RSFPQLIGATTMQDLH 282
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
FR+L PA+KVG++IG+ G IK + +ET + +K++D + + +++S PD I P
Sbjct: 167 FRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIPP 226
Query: 392 VQEAVFRVQNRVARAIPDVNEHSM------LARVLVSSNQIGCLLGKGGSIITEMRKLSG 445
E + RV +VA + + + + + R+LV+ Q G L+GK GS I + +G
Sbjct: 227 AVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDSTG 286
Query: 446 AHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+IRILG + +P A ++ +++I GE VH A+ I L+
Sbjct: 287 CNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLR 329
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 160 KALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESG 219
+ L V ++ V + AD + +G+ S + RLL+ Q G L+GK GS IK +G
Sbjct: 229 EGLLRVHKQVANVVSEPADTAQGAGRPS--ITRLLVADTQAGSLIGKQGSTIKIFQDSTG 286
Query: 220 AQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
IRIL + LP+ A D IV+I G V KA++ ++L L
Sbjct: 287 CNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHL 328
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 7/164 (4%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
FR+L PA+KVG++IG+ G IK + +ET + +K++D + + +++S PD I P
Sbjct: 167 FRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIPP 226
Query: 392 VQEAVFRVQNRVARAIPDVNEHSM------LARVLVSSNQIGCLLGKGGSIITEMRKLSG 445
E + RV +VA + + + + + R+LV+ Q G L+GK GS I + +G
Sbjct: 227 AVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDSTG 286
Query: 446 AHIRILGK-DKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+IRILG + +P A ++ +++I GE VH A+ I L+
Sbjct: 287 CNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLR 330
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 160 KALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESG 219
+ L V ++ V + AD + +G+ S + RLL+ Q G L+GK GS IK +G
Sbjct: 229 EGLLRVHKQVANVVSEPADTAQGAGRPS--ITRLLVADTQAGSLIGKQGSTIKIFQDSTG 286
Query: 220 AQIRIL-PKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
IRIL + LP+ A D IV+I G V KA++ ++L L
Sbjct: 287 CNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHL 329
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 7/164 (4%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
FR+L PA+KVG++IG+ G IK + +ET + +K++D + + +++S PD I P
Sbjct: 167 FRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIPP 226
Query: 392 VQEAVFRVQNRVARAIPDVNEHSM------LARVLVSSNQIGCLLGKGGSIITEMRKLSG 445
E + RV +VA + + + + + R+LV+ Q G L+GK GS I + +G
Sbjct: 227 AVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDSTG 286
Query: 446 AHIRILGK-DKIPKCASENEEVIQITGEIEAVHDALLQITTRLK 488
+IRILG + +P A ++ +++I GE VH A+ I L+
Sbjct: 287 CNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLR 330
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 160 KALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESG 219
+ L V ++ V + AD + +G+ S + RLL+ Q G L+GK GS IK +G
Sbjct: 229 EGLLRVHKQVANVVSEPADTAQGAGRPS--ITRLLVADTQAGSLIGKQGSTIKIFQDSTG 286
Query: 220 AQIRIL-PKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
IRIL + LP+ A D IV+I G V KA++ ++L L
Sbjct: 287 CNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHL 329
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 156/363 (42%), Gaps = 39/363 (10%)
Query: 331 TFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRIS 390
FR+L PA+KVG +IG+ G IK + +ET + +K++D P + + +++S P +
Sbjct: 48 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSSLP 107
Query: 391 PVQEAVFRVQNRVARAI--PDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHI 448
P + + + R+ + P + + LV ++Q G L+GK G + +++ S +
Sbjct: 108 PAVDGLLKAHKRLIDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASNCIV 167
Query: 449 RILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSNPAFL 508
R+LG + +P A +++ V+++ G+ VH A+ I + LK F D + +
Sbjct: 168 RVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKK-FLVDRSIIPIFEMSMQMA 226
Query: 509 DNLP-PFLPYLGRRGISPPGMYSDLGPP---PPHAG----FPLDDRPPFM-------NNI 553
+N P +P PP + GPP PP+AG F L P FM N
Sbjct: 227 NNHPVEHMPV-------PPPPHQSWGPPQGLPPNAGGGPGFGL--APQFMPPRRQVDNYY 277
Query: 554 HRSGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATXXX 613
+ +PP + +++P H G+ + + T T
Sbjct: 278 PPAEMPPPL-DKQP-----------HHGISAYGRDASIGVHASSNTQSAPSMVTQITQQM 325
Query: 614 XXXXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQ 673
+ G G + I + S A + I + + E + ISGT Q AQ LIQ
Sbjct: 326 QIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQ 385
Query: 674 AFV 676
F+
Sbjct: 386 NFM 388
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 161 ALSLVFDRMVEGVEDTADG-DEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESG 219
+L D +++ + DG D SG A + L+ ++Q G L+GK G +K + S
Sbjct: 105 SLPPAVDGLLKAHKRLIDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASN 164
Query: 220 AQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
+R+L + LPV A D +V++ G V KA++ ++ L
Sbjct: 165 CIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHL 206
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 153/359 (42%), Gaps = 31/359 (8%)
Query: 331 TFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRIS 390
FR+L PA+KVG +IG+ G IK + +ET + +K++D P + + +++S P +
Sbjct: 116 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSSLP 175
Query: 391 PVQEAVFRVQNRVARAI--PDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHI 448
P + + + R+ + P + + LV ++Q G L+GK G + +++ S +
Sbjct: 176 PAVDGLLKAHKRLIDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASNCIV 235
Query: 449 RILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSNPAFL 508
R+LG + +P A +++ V+++ G+ VH A+ I + LK F D + +
Sbjct: 236 RVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKK-FLVDRSIIPIFEMSMQMA 294
Query: 509 DNLP-PFLPYLGRRGISPPGMYSDLGPP---PPHAG----FPLDDRPPFMNNIHRSGIPP 560
+N P +P PP + GPP PP+AG F L P FM PP
Sbjct: 295 NNHPVEHMPV-------PPPPHQSWGPPQGLPPNAGGGPGFGL--APQFM--------PP 337
Query: 561 HIAERKPWGPQGI---LEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATXXXXXXX 617
+ P + L+ H G+ + + T T
Sbjct: 338 RRQVDNYYPPAEMPPPLDKQPHHGISAYGRDASIGVHASSNTQSAPSMVTQITQQMQIPL 397
Query: 618 XXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFV 676
+ G G + I + S A + I + + E + ISGT Q AQ LIQ F+
Sbjct: 398 SYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 456
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 161 ALSLVFDRMVEGVEDTADG-DEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESG 219
+L D +++ + DG D SG A + L+ ++Q G L+GK G +K + S
Sbjct: 173 SLPPAVDGLLKAHKRLIDGLDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASN 232
Query: 220 AQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
+R+L + LPV A D +V++ G V KA++ ++ L
Sbjct: 233 CIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHL 274
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
FRL+ P KVG +IG+ G +IK +ET + I+V+DA + D +++ISG + +SP
Sbjct: 46 FRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPLSP 105
Query: 392 VQEAVFRVQNRVARAIPDVNEHSMLA-------RVLVSSNQIGCLLGKGGSIITEMRKLS 444
+A+ R+ RV+ N ++ A R+LV+S Q L+GK GS I +++ +
Sbjct: 106 AMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQENT 165
Query: 445 GAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDA 495
GA IR+L D++P A +E +I + GE V AL + L+ F D+
Sbjct: 166 GAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLR-KFLVDS 215
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
A+ +F R V G+ +T + + + + RLL+ S Q L+GK GS IK + +GA
Sbjct: 109 AILRIFKR-VSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQENTGA 167
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSV 257
IR+L D+LP A A + I+ + G V KAL++V
Sbjct: 168 VIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAV 204
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 112/198 (56%), Gaps = 20/198 (10%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ FR++ P++++G +IGK G I+ +++ T + IK+ DA+ E+ VI+IS + D+ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEMV 158
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLA---------RVLVSSNQIGCLLGKGGSIITEM 440
+ ++A+ ++ N + + + S L R+L++ +Q G L+G G I ++
Sbjct: 159 TDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKL 218
Query: 441 RKLSGAHIRILGKDKIPKCAS--ENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAY-- 496
R SGA I +L ++P CAS E++ V+Q++G++ V AL +I +L+ + R
Sbjct: 219 RNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISI 278
Query: 497 -PSANY----PSNPAFLD 509
P+ NY PS P +LD
Sbjct: 279 SPTYNYAAIRPSQP-YLD 295
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 53/217 (24%)
Query: 160 KALSLVFDRMVEGVEDTADGDE-ESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAES 218
KAL + + +++ + D + +G ++ RLLI +Q G L+G G I+K+ S
Sbjct: 163 KALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSS 222
Query: 219 GAQIRILPKDKLPVCASA--SDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNF 276
GA I +L +LP+CASA SD +VQ++G V V KAL+ + QL ENPPR S+S +
Sbjct: 223 GAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPTY 282
Query: 277 TGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQ--------E 328
+AA +RPSQ +
Sbjct: 283 N----------------YAA--------------------------IRPSQPYLDPNSVD 300
Query: 329 MLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV 365
+TF +L VG LIG+ G+ I ++ E+ + IKV
Sbjct: 301 YVTFEMLISETMVGGLIGRCGSNISRIRNESGAMIKV 337
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 112/198 (56%), Gaps = 20/198 (10%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ FR++ P++++G +IGK G I+ +++ T + IK+ DA+ E+ VI+IS + D+ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEMV 158
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLA---------RVLVSSNQIGCLLGKGGSIITEM 440
+ ++A+ ++ N + + + S L R+L++ +Q G L+G G I ++
Sbjct: 159 TDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKL 218
Query: 441 RKLSGAHIRILGKDKIPKCAS--ENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAY-- 496
R SGA I +L ++P CAS E++ V+Q++G++ V AL +I +L+ + R
Sbjct: 219 RNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISI 278
Query: 497 -PSANY----PSNPAFLD 509
P+ NY PS P +LD
Sbjct: 279 SPTYNYAAIRPSQP-YLD 295
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 53/217 (24%)
Query: 160 KALSLVFDRMVEGVEDTADGDE-ESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAES 218
KAL + + +++ + D + +G ++ RLLI +Q G L+G G I+K+ S
Sbjct: 163 KALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSS 222
Query: 219 GAQIRILPKDKLPVCASA--SDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNF 276
GA I +L +LP+CASA SD +VQ++G V V KAL+ + QL ENPPR S+S +
Sbjct: 223 GAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPTY 282
Query: 277 TGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQ--------E 328
+AA +RPSQ +
Sbjct: 283 N----------------YAA--------------------------IRPSQPYLDPNSVD 300
Query: 329 MLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV 365
+TF +L VG LIG+ G+ I ++ E+ + IKV
Sbjct: 301 YVTFEMLISETMVGGLIGRCGSNISRIRNESGAMIKV 337
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 112/198 (56%), Gaps = 20/198 (10%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ FR++ P++++G +IGK G I+ +++ T + IK+ DA+ E+ VI+IS + D+ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEMV 158
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLA---------RVLVSSNQIGCLLGKGGSIITEM 440
+ ++A+ ++ N + + + S L R+L++ +Q G L+G G I ++
Sbjct: 159 TDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKL 218
Query: 441 RKLSGAHIRILGKDKIPKCAS--ENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAY-- 496
R SGA I +L ++P CAS E++ V+Q++G++ V AL +I +L+ + R
Sbjct: 219 RNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISI 278
Query: 497 -PSANY----PSNPAFLD 509
P+ NY PS P +LD
Sbjct: 279 SPTYNYAAIRPSQP-YLD 295
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 53/217 (24%)
Query: 160 KALSLVFDRMVEGVEDTADGDE-ESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAES 218
KAL + + +++ + D + +G ++ RLLI +Q G L+G G I+K+ S
Sbjct: 163 KALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSS 222
Query: 219 GAQIRILPKDKLPVCASA--SDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNF 276
GA I +L +LP+CASA SD +VQ++G V V KAL+ + QL ENPPR S+S +
Sbjct: 223 GAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPTY 282
Query: 277 TGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQ--------E 328
+AA +RPSQ +
Sbjct: 283 N----------------YAA--------------------------IRPSQPYLDPNSVD 300
Query: 329 MLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV 365
+TF +L VG LIG+ G+ I ++ E+ + IKV
Sbjct: 301 YVTFEMLISETMVGGLIGRCGSNISRIRNESGAMIKV 337
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 115/206 (55%), Gaps = 20/206 (9%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ FR++ P++++G +IGK G I+ +++ T + IK+ DA+ E+ VI+IS + D+ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEMV 158
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLA---------RVLVSSNQIGCLLGKGGSIITEM 440
+ ++A+ ++ N + + + S L R+L++ +Q G L+G G I ++
Sbjct: 159 TDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKL 218
Query: 441 RKLSGAHIRILGKDKIPKCAS--ENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAY-- 496
R SGA I +L ++P CAS E++ V+Q++G++ V AL +I +L+ + R
Sbjct: 219 RNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISI 278
Query: 497 -PSANY----PSNPAFLDNLPPFLPY 517
P+ NY PS P +LD +L +
Sbjct: 279 SPTYNYAAIRPSQP-YLDPNSGYLKF 303
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 160 KALSLVFDRMVEGVEDTADGDE-ESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAES 218
KAL + + +++ + D + +G ++ RLLI +Q G L+G G I+K+ S
Sbjct: 163 KALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSS 222
Query: 219 GAQIRILPKDKLPVCASA--SDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNF 276
GA I +L +LP+CASA SD +VQ++G V V KAL+ + QL ENPPR S+S +
Sbjct: 223 GAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPTY 282
Query: 277 T 277
Sbjct: 283 N 283
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 112/198 (56%), Gaps = 20/198 (10%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ FR++ P++++G +IGK G I+ +++ T + IK+ DA+ E+ VI+IS + D+ +
Sbjct: 100 VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDN-DEMV 158
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLA---------RVLVSSNQIGCLLGKGGSIITEM 440
+ ++A+ ++ N + + + S L R+L++ +Q G L+G G I ++
Sbjct: 159 TDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKL 218
Query: 441 RKLSGAHIRILGKDKIPKCAS--ENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAY-- 496
R SGA I +L ++P CAS E++ V+Q++G++ V AL +I +L+ + R
Sbjct: 219 RNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISI 278
Query: 497 -PSANY----PSNPAFLD 509
P+ NY PS P +LD
Sbjct: 279 SPTYNYAAIRPSQP-YLD 295
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 160 KALSLVFDRMVEGVEDTADGDE-ESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAES 218
KAL + + +++ + D + +G ++ RLLI +Q G L+G G I+K+ S
Sbjct: 163 KALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSS 222
Query: 219 GAQIRILPKDKLPVCASA--SDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNF 276
GA I +L +LP+CASA SD +VQ++G V V KAL+ + QL ENPPR S+S +
Sbjct: 223 GAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPTY 282
Query: 277 T 277
Sbjct: 283 N 283
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
FRL+ P KVG +IG+ G +IK + ET + ++V+DA D +I+ISG + ISP
Sbjct: 72 FRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILISGKEELEAAISP 131
Query: 392 VQEAVFRVQNRVARAIPDVNEHSMLA-------RVLVSSNQIGCLLGKGGSIITEMRKLS 444
+AV R+ RV+ +E+ A R+LV+S Q L+GK G+II +++ S
Sbjct: 132 AMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRSIQESS 191
Query: 445 GAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHF 491
GA +R+L D++ A+ E ++ + GE V AL + L+
Sbjct: 192 GASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFL 238
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 161 ALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGA 220
A+ +F R V G+ +T ++ + RLL+ S Q L+GK G++I+ + SGA
Sbjct: 135 AVIRIFKR-VSGLSETDSENKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRSIQESSGA 193
Query: 221 QIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSV 257
+R+L D++ A+A + IV + G +V KAL++V
Sbjct: 194 SVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAV 230
>Medtr5g049770.1 | RNA-binding KH domain protein | HC |
chr5:21769759-21766560 | 20130731
Length = 241
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 120/256 (46%), Gaps = 48/256 (18%)
Query: 423 SNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQ 482
S+Q+G ++GKGG I+ +R SG++IR+ P CA+++EE+I ITG + +AL +
Sbjct: 28 SSQVGAIVGKGGKNISNIRNNSGSNIRVC---PAPHCAAKDEELILITGGYRCIENALRK 84
Query: 483 ITTRLKHH-FFRDAYPSANY-PSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAG 540
IT+ ++++ + A PS P D + ++ R+ +
Sbjct: 85 ITSIIRNNPLTNEVLAEARIKPSFPLNKDTVRS--KFITRK----------------KSS 126
Query: 541 FPLDDRPPFMNNIHRSGIPPHIAERKPWGPQGILEGG-GHMGLPDFAGGPPRRILGFGGG 599
FP PP +G+ + + + E G H L + P R G
Sbjct: 127 FPFARVPP-----QNAGV---------YQAKKVTENGESHTNLIENV--EPGR------G 164
Query: 600 NQPIITHTSATXXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITDPK-PGAVETKIII 658
N + T T+ T +YGEDG L +I QIS A + + DP G K++I
Sbjct: 165 N-IVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVI 223
Query: 659 SGTPEQTHAAQSLIQA 674
SGTP+QT AAQSL+QA
Sbjct: 224 SGTPDQTFAAQSLLQA 239
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 197 SNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQS 256
S+QVG ++GKGG I + SG+ IR+ P P CA+ +E++ ITGG + AL+
Sbjct: 28 SSQVGAIVGKGGKNISNIRNNSGSNIRVCPA---PHCAAKDEELILITGGYRCIENALRK 84
Query: 257 VSLQLLENPPRDHESLS 273
++ ++ N P +E L+
Sbjct: 85 IT-SIIRNNPLTNEVLA 100
>Medtr7g082290.1 | KH domain protein | HC | chr7:31538792-31537882 |
20130731
Length = 188
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 48/56 (85%)
Query: 413 HSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQ 468
HSM V+V++N IGCL+GKGGSIITEMR+L+ ++IRIL K+ +PK AS+++E++Q
Sbjct: 28 HSMGKAVIVAANMIGCLIGKGGSIITEMRRLTRSNIRILSKENLPKIASDDDEMVQ 83
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 193 LLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQ 242
+++ +N +GCL+GKGGS+I +M + + IRIL K+ LP AS DE+VQ
Sbjct: 34 VIVAANMIGCLIGKGGSIITEMRRLTRSNIRILSKENLPKIASDDDEMVQ 83
>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
chr3:48040831-48036380 | 20130731
Length = 605
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 27/251 (10%)
Query: 333 RLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV---IDAVPDSEDCVIVISGPAHPDDRI 389
++ P +VG LIGKGG IK +Q ++ ++I+V +DA P+S+ ++ + G D +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTP---DAV 145
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLAR-------VLVSSNQIGCLLGKGGSIITEMRK 442
S ++ + V M+A+ + + +N++G ++GKGG I M+
Sbjct: 146 SSAEKLINEVLAEAEAGASVGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKGMQA 205
Query: 443 LSGAHIRILGKDKIPKCASENEEVIQITG---EIEAVHDALLQITT---RLKHHFFRDAY 496
+GA I+++ P S E ++I G +IE+ + QI T RL++ Y
Sbjct: 206 STGARIQVIPLHPPPGDTS-TERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGY 264
Query: 497 PSANYPSNPAFLDNLPPFLP-YLGRRGISPPGMYSDLG-----PPPPHAGFPLDDRPPFM 550
Y S P PP P G PG YS P PP+ G+P +
Sbjct: 265 TQQGYQSRPP-SSWAPPAAPVQQAGYGYGQPGSYSGPSPQYNTPQPPYTGYPPQQPGGYS 323
Query: 551 NNIHRSGIPPH 561
N +S P H
Sbjct: 324 ANWDQSTAPSH 334
>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
chr3:48031833-48027169 | 20130731
Length = 605
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 25/250 (10%)
Query: 333 RLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV---IDAVPDSEDCVIVISGPAHPDDRI 389
++ P +VG LIGKGG IK +Q ++ ++I+V +DA P+S+ ++ + G D +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTP---DAV 145
Query: 390 SPVQEAVFRVQNRVARAIPDVNEHSMLAR-------VLVSSNQIGCLLGKGGSIITEMRK 442
S ++ + V M+A+ + + +N++G ++GKGG I M+
Sbjct: 146 SSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQA 205
Query: 443 LSGAHIRILGKDKIPKCASENEEVIQITG---EIEAVHDALLQITT---RLKHHFFRDAY 496
+GA I+++ P S E ++I G +IE+ + QI T RL++ Y
Sbjct: 206 STGARIQVIPLHPPPGDTS-TERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGY 264
Query: 497 PSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLG-----PPPPHAGFPLDDRPPFMN 551
Y S P PP G PG YS P PP+AG+P +
Sbjct: 265 TQQGYQSRPPSSWAPPPAPVQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSA 324
Query: 552 NIHRSGIPPH 561
N +S P H
Sbjct: 325 NWDQSTAPSH 334
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 40/259 (15%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV---IDAVPDSEDCVIVISGP 382
S + + ++ P +VG +IGKGG IK +Q ++ ++I+V +DA P+S + ++ ++G
Sbjct: 108 SHQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGT 167
Query: 383 AHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVL------------VSSNQIGCLL 430
+ D I+ ++ + V +A A + + ++ R + + +N++G ++
Sbjct: 168 S---DAIATAEKLIKEV---LAEA--ESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLII 219
Query: 431 GKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVH------DALLQIT 484
GKGG I M+ +GA I+++ +P + E ++I G E + D++L
Sbjct: 220 GKGGETIKSMQATTGARIQVI-PLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGE 278
Query: 485 TRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPP-------P 537
RL++ Y Y + P PP G + PG Y GP P
Sbjct: 279 NRLRNPSMSGGYSQQGYQARPP-SSWAPPAASQQPGYGYAQPGAYP--GPTPQYNVPQQA 335
Query: 538 HAGFPLDDRPPFMNNIHRS 556
+AG+P + N +S
Sbjct: 336 YAGYPPHSAGGYSTNWDQS 354
>Medtr5g008420.1 | RNA-binding KH domain protein | HC |
chr5:1773973-1764791 | 20130731
Length = 780
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 117/294 (39%), Gaps = 56/294 (19%)
Query: 328 EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVI---DAVPDSEDCVIVISGPAH 384
+ T ++ P+ KVG LIGK G I+ +Q + ++I++ DA P S + + G
Sbjct: 183 DTTTRKIEVPSNKVGVLIGKSGDTIRYLQYNSGAKIQITRDADADPHSSTRPVELIGTLE 242
Query: 385 PDDRISPVQEAVFRVQNR------VARAIPDVNEHSMLARVLVSSNQI---------GCL 429
D+ + AV + VAR + A+ +V S+QI G +
Sbjct: 243 SIDKAEKLMNAVIAEADAGGSPALVARGL-------SPAQAIVGSDQIQIQVPNEKVGLI 295
Query: 430 LGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEI-------EAVHDALLQ 482
+GKGG I ++ +GA I+++ + +P+ E +Q+TG+ E + + L Q
Sbjct: 296 IGKGGETIKSLQTKTGARIQLIPQ-HLPEGDDSKERTVQVTGDKRQIEIAQEMIKEVLSQ 354
Query: 483 ITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGM-YSDLGPPPPHAGF 541
F + AY P PP G PP Y GP P H
Sbjct: 355 PIRSSSGGFGQQAY-------RPPRGSGGPPQWGQRGSHYGQPPSYDYQHRGPYPSHNQS 407
Query: 542 PLDDRPPFMNNIHRSGIPPHIAERKPWG------PQGILEG-GGHMGLPDFAGG 588
PP+ N P H+A R +G P +G H G D+ GG
Sbjct: 408 YAP--PPYGN------YPQHMAPRSSYGSGWEQRPHQSFQGPPSHNGGYDYYGG 453
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 158 IRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAE 217
+ +A+ L+ +++ + D D E RL++ + G ++GKGG+ I+ E
Sbjct: 95 VLRAVELILSKLLSELHSEDDNDVEPKTK----VRLIVPNGSCGGIIGKGGATIRSFIEE 150
Query: 218 SGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFT 277
S A I+I P+D +D IV +TG ++ + + + +L E+P H S+S+ FT
Sbjct: 151 SQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDPHYSH-SMSSPFT 207
Query: 278 GXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIH------GRMRPSQEMLT 331
+ +G + PS+ + G + + + S+E +
Sbjct: 208 ------------YSGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRPNGTGAKFQNSKEDRS 255
Query: 332 FRLL--CPAEKVGNLIGKGGAIIKSVQQETASEIKVI---DAVPDSEDCVIVISG 381
+ E +G ++G+GG I + Q + ++IK+ D + + D + I+G
Sbjct: 256 NSMTIGVADEHIGLVVGRGGRNISDISQTSGAKIKISDRGDYISGTTDRKVTITG 310
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 158 IRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAE 217
+ +A+ L+ +++ + D D E RL++ + G ++GKGG+ I+ E
Sbjct: 95 VLRAVELILSKLLSELHSEDDNDVEPKTK----VRLIVPNGSCGGIIGKGGATIRSFIEE 150
Query: 218 SGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFT 277
S A I+I P+D +D IV +TG ++ + + + +L E+P H S+S+ FT
Sbjct: 151 SQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDPHYSH-SMSSPFT 207
Query: 278 GXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIH------GRMRPSQEMLT 331
+ +G + PS+ + G + + + S+E +
Sbjct: 208 ------------YSGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRPNGTGAKFQNSKEDRS 255
Query: 332 FRLL--CPAEKVGNLIGKGGAIIKSVQQETASEIKVI---DAVPDSEDCVIVISG 381
+ E +G ++G+GG I + Q + ++IK+ D + + D + I+G
Sbjct: 256 NSMTIGVADEHIGLVVGRGGRNISDISQTSGAKIKISDRGDYISGTTDRKVTITG 310
>Medtr1g090773.1 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40788935-40785620 | 20130731
Length = 251
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 158 IRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAE 217
+ +A+ L+ +++ + D D E RL++ + G ++GKGG+ I+ E
Sbjct: 9 VLRAVELILSKLLSELHSEDDNDVEPKTK----VRLIVPNGSCGGIIGKGGATIRSFIEE 64
Query: 218 SGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFT 277
S A I+I P+D +D IV +TG ++ + + + +L E+P H S+S+ FT
Sbjct: 65 SQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDPHYSH-SMSSPFT 121
Query: 278 GXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIH------GRMRPSQEMLT 331
+ +G + PS+ + G + + + S+E +
Sbjct: 122 ------------YSGAYVSGYQGVPYTYVLPSVAPPAYNGVNYRPNGTGAKFQNSKEDRS 169
Query: 332 FRLL--CPAEKVGNLIGKGGAIIKSVQQETASEIKVID 367
+ E +G ++G+GG I + Q + ++IK+ D
Sbjct: 170 NSMTIGVADEHIGLVVGRGGRNISDISQTSGAKIKISD 207