Miyakogusa Predicted Gene

Lj1g3v2069880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2069880.1 Non Characterized Hit- tr|I3S8F6|I3S8F6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.46,0,Peptidyl-tRNA hydrolase II,Peptidyl-tRNA hydrolase II
domain; arch_pth2: peptidyl-tRNA hydrolase,Pep,CUFF.28414.1
         (237 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g109700.1 | peptidyl-tRNA hydrolase II (PTH2) family prote...   268   4e-72
Medtr3g109700.2 | peptidyl-tRNA hydrolase II (PTH2) family prote...   219   1e-57
Medtr3g109700.4 | peptidyl-tRNA hydrolase II (PTH2) family prote...   218   3e-57
Medtr3g109700.3 | peptidyl-tRNA hydrolase II (PTH2) family prote...   218   3e-57
Medtr4g075280.1 | peptidyl-tRNA hydrolase II (PTH2) family prote...   117   1e-26

>Medtr3g109700.1 | peptidyl-tRNA hydrolase II (PTH2) family protein
           | HC | chr3:51313724-51317111 | 20130731
          Length = 193

 Score =  268 bits (684), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/176 (76%), Positives = 147/176 (83%), Gaps = 1/176 (0%)

Query: 63  GEWLAGSFKPENXXXXXXXXXXXXXXXXXSKPHRNLLSKKIFSPSKVQQHLTLSGNG-DR 121
           GEWL+GSFKPEN                 SKP RN LS KIFS +K+Q  L++S NG D+
Sbjct: 18  GEWLSGSFKPENFIPGLVIGFICGLLIDLSKPTRNHLSNKIFSSTKLQNQLSVSSNGADQ 77

Query: 122 EFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQ 181
           E KMVLVVRQDLKMKSGKIASQCAHAATGMYAELM+S+RSLLRQWEQCGQPKIVVTC+NQ
Sbjct: 78  ELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMRSNRSLLRQWEQCGQPKIVVTCKNQ 137

Query: 182 QEMNKLKETAESIGLPTFVVADAGRTEVSAGSKTVLAVGPGPKASVDSVTGRLALL 237
           QEMNKL E AESIGLPTFVV+DAGRT+VSAGSKTVLAVGPGPKA +DSVTGRL+LL
Sbjct: 138 QEMNKLTEAAESIGLPTFVVSDAGRTQVSAGSKTVLAVGPGPKAILDSVTGRLSLL 193


>Medtr3g109700.2 | peptidyl-tRNA hydrolase II (PTH2) family protein
           | HC | chr3:51313724-51317111 | 20130731
          Length = 174

 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 120/148 (81%), Gaps = 1/148 (0%)

Query: 63  GEWLAGSFKPENXXXXXXXXXXXXXXXXXSKPHRNLLSKKIFSPSKVQQHLTLSGNG-DR 121
           GEWL+GSFKPEN                 SKP RN LS KIFS +K+Q  L++S NG D+
Sbjct: 18  GEWLSGSFKPENFIPGLVIGFICGLLIDLSKPTRNHLSNKIFSSTKLQNQLSVSSNGADQ 77

Query: 122 EFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQ 181
           E KMVLVVRQDLKMKSGKIASQCAHAATGMYAELM+S+RSLLRQWEQCGQPKIVVTC+NQ
Sbjct: 78  ELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMRSNRSLLRQWEQCGQPKIVVTCKNQ 137

Query: 182 QEMNKLKETAESIGLPTFVVADAGRTEV 209
           QEMNKL E AESIGLPTFVV+DAGRT+V
Sbjct: 138 QEMNKLTEAAESIGLPTFVVSDAGRTQV 165


>Medtr3g109700.4 | peptidyl-tRNA hydrolase II (PTH2) family protein
           | HC | chr3:51313724-51317089 | 20130731
          Length = 175

 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 120/150 (80%), Gaps = 1/150 (0%)

Query: 63  GEWLAGSFKPENXXXXXXXXXXXXXXXXXSKPHRNLLSKKIFSPSKVQQHLTLSGNG-DR 121
           GEWL+GSFKPEN                 SKP RN LS KIFS +K+Q  L++S NG D+
Sbjct: 18  GEWLSGSFKPENFIPGLVIGFICGLLIDLSKPTRNHLSNKIFSSTKLQNQLSVSSNGADQ 77

Query: 122 EFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQ 181
           E KMVLVVRQDLKMKSGKIASQCAHAATGMYAELM+S+RSLLRQWEQCGQPKIVVTC+NQ
Sbjct: 78  ELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMRSNRSLLRQWEQCGQPKIVVTCKNQ 137

Query: 182 QEMNKLKETAESIGLPTFVVADAGRTEVSA 211
           QEMNKL E AESIGLPTFVV+DAGRT+  A
Sbjct: 138 QEMNKLTEAAESIGLPTFVVSDAGRTQEHA 167


>Medtr3g109700.3 | peptidyl-tRNA hydrolase II (PTH2) family protein
           | HC | chr3:51313724-51317111 | 20130731
          Length = 175

 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 120/150 (80%), Gaps = 1/150 (0%)

Query: 63  GEWLAGSFKPENXXXXXXXXXXXXXXXXXSKPHRNLLSKKIFSPSKVQQHLTLSGNG-DR 121
           GEWL+GSFKPEN                 SKP RN LS KIFS +K+Q  L++S NG D+
Sbjct: 18  GEWLSGSFKPENFIPGLVIGFICGLLIDLSKPTRNHLSNKIFSSTKLQNQLSVSSNGADQ 77

Query: 122 EFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQ 181
           E KMVLVVRQDLKMKSGKIASQCAHAATGMYAELM+S+RSLLRQWEQCGQPKIVVTC+NQ
Sbjct: 78  ELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMRSNRSLLRQWEQCGQPKIVVTCKNQ 137

Query: 182 QEMNKLKETAESIGLPTFVVADAGRTEVSA 211
           QEMNKL E AESIGLPTFVV+DAGRT+  A
Sbjct: 138 QEMNKLTEAAESIGLPTFVVSDAGRTQEHA 167


>Medtr4g075280.1 | peptidyl-tRNA hydrolase II (PTH2) family protein
           | HC | chr4:28750648-28746516 | 20130731
          Length = 190

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 80/117 (68%), Gaps = 1/117 (0%)

Query: 121 REFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRN 180
            +FKM+LVVR DLKM  GKIA+QC+HA  G+Y +++      L +WE   QPK+VV   +
Sbjct: 75  EDFKMILVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMSAQPKVVVKIES 134

Query: 181 QQEMNKLKETAESIGLPTFVVADAGRTEVSAGSKTVLAVGPGPKASVDSVTGRLALL 237
           +++M  L+E A+S+ LPT +  DAGRT+++  S+TV+A+  GP   VD VTG L LL
Sbjct: 135 EEDMLALQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDEVTGGLKLL 190