Miyakogusa Predicted Gene

Lj1g3v2063290.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2063290.1 tr|C1E5F9|C1E5F9_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_81588
,54.02,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,ER
membrane protein complex subunit 1; DUF1620,D,CUFF.28365.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g110090.1 | ER membrane protein complex subunit-like prote...   137   2e-33
Medtr3g110140.1 | ER membrane protein complex subunit-like prote...   137   2e-33

>Medtr3g110090.1 | ER membrane protein complex subunit-like protein
           | HC | chr3:50996180-50991076 | 20130731
          Length = 849

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 70/87 (80%)

Query: 12  QSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSYXXXX 71
           QSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSY    
Sbjct: 763 QSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSYALLL 822

Query: 72  XXXXXXXXXXXXXWVLSERKDLEEKWR 98
                        +VLSERKDLEEKWR
Sbjct: 823 LTIVALVAALFVTYVLSERKDLEEKWR 849


>Medtr3g110140.1 | ER membrane protein complex subunit-like protein
           | HC | chr3:51102144-51094218 | 20130731
          Length = 983

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 70/87 (80%)

Query: 12  QSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSYXXXX 71
           QSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSY    
Sbjct: 897 QSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSYALLL 956

Query: 72  XXXXXXXXXXXXXWVLSERKDLEEKWR 98
                        +VLSERKDLEEKWR
Sbjct: 957 LTIVALVAALFVTYVLSERKDLEEKWR 983