Miyakogusa Predicted Gene

Lj1g3v2051930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2051930.1 Non Characterized Hit- tr|I1K9A0|I1K9A0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15194
PE,93.73,0,SUBFAMILY NOT NAMED,NULL; EUKARYOTIC TRANSLATION INITIATION
FACTOR 3,NULL; Paf67,Translation
initiat,gene.Ljchr1_pseudomol_20120830.path1.gene4802.1
         (384 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g110068.1 | RNA polymerase I-associated factor PAF67 | HC ...   663   0.0  
Medtr3g109300.1 | 26S proteasome non-ATPase regulatory subunit-l...    89   7e-18

>Medtr3g110068.1 | RNA polymerase I-associated factor PAF67 | HC |
           chr3:50953251-50948786 | 20130731
          Length = 511

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/351 (90%), Positives = 327/351 (93%), Gaps = 4/351 (1%)

Query: 1   MYETSFQTLSERLFKDTPWPSVDAGAHYGDNDNAFCLLYREMRCRHLYARLTPKLRQRIE 60
           MYETSFQTLSER FKDTPWPSVDA A Y DND+ FCLLYREM  RHLYARLTP LRQRI+
Sbjct: 46  MYETSFQTLSERFFKDTPWPSVDAVAQYVDNDHVFCLLYREMWFRHLYARLTPTLRQRID 105

Query: 61  SWDNYCPLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQ 120
           SWDNYC LFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALL+Q
Sbjct: 106 SWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLKQ 165

Query: 121 FDQAWNVYGVLNYLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSM 180
           FDQAWNV+GVLN+LQALVEKS IIQILEQEKEGLEQFT+ DGYDYNGGSNVLKVLGYFSM
Sbjct: 166 FDQAWNVFGVLNFLQALVEKSTIIQILEQEKEGLEQFTSNDGYDYNGGSNVLKVLGYFSM 225

Query: 181 VGLLRVHCLLGDYHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRSLFYRYV 240
           VGLLRVHCLLGDYHTGLKCL PIDI+Q GVYT VIG HITTIYHYGFANLMLR    RYV
Sbjct: 226 VGLLRVHCLLGDYHTGLKCLEPIDISQSGVYTIVIGCHITTIYHYGFANLMLR----RYV 281

Query: 241 EAIREFNKILLYIYKTKQYHNKSPQYEQILKKNEQMYALLAICLSLCPQSRLVDETVNSQ 300
           +AIREFNKILLYI+K K YH KSPQYEQILKKNEQMYALLAI LSLCPQSRLVDETVNSQ
Sbjct: 282 DAIREFNKILLYIFKYKVYHQKSPQYEQILKKNEQMYALLAISLSLCPQSRLVDETVNSQ 341

Query: 301 LREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITPSAPSFDEPLVNYNQ 351
           LREKYGEKM RMQRYDDEAFAMYDELFSYACPKFITPSAPSF+EPLVNYNQ
Sbjct: 342 LREKYGEKMSRMQRYDDEAFAMYDELFSYACPKFITPSAPSFEEPLVNYNQ 392


>Medtr3g109300.1 | 26S proteasome non-ATPase regulatory subunit-like
           protein | LC | chr3:50533714-50540516 | 20130731
          Length = 671

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 65/106 (61%), Gaps = 23/106 (21%)

Query: 235 LFYRYVEAIREFNKILLYIYKTKQYHNKSPQYEQILK--KNEQMYALLAICLS-LCPQSR 291
           LFY+YV+AI EFN ILLYI+ TK Y+ KSPQYE+ILK  KNEQ   +  +  S +CPQS 
Sbjct: 138 LFYKYVQAICEFNIILLYIFTTKVYYQKSPQYERILKRNKNEQNACVAFVSRSGICPQS- 196

Query: 292 LVDETVNSQLREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITP 337
                              + +RYDDEAF +YDELF YAC K + P
Sbjct: 197 -------------------KCKRYDDEAFDVYDELFPYACHKKLFP 223