Miyakogusa Predicted Gene
- Lj1g3v2038800.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2038800.1 tr|Q54TG6|Q54TG6_DICDI Lupus La protein
OS=Dictyostelium discoideum GN=DDB_0204655 PE=4
SV=1,34.48,4e-19,RNA-BINDING PROTEIN-RELATED,NULL; LUPUS LA
PROTEIN-RELATED,NULL; "Winged helix" DNA-binding domain,N,CUFF.28606.1
(225 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g026890.1 | RNA recognition motif protein | HC | chr1:8835... 330 4e-91
Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain pro... 68 6e-12
Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain pro... 68 6e-12
Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain pro... 67 2e-11
Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain pro... 66 3e-11
Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain pro... 55 7e-08
>Medtr1g026890.1 | RNA recognition motif protein | HC |
chr1:8835899-8830191 | 20130731
Length = 482
Score = 330 bits (847), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 163/222 (73%), Positives = 190/222 (85%), Gaps = 2/222 (0%)
Query: 6 TLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGD 65
+L+EETTKKVIRQVEFYFSDSNLP+D+F+ KTV+ESEDGMVSLALLCSFNRMR+HL L D
Sbjct: 5 SLDEETTKKVIRQVEFYFSDSNLPRDDFLSKTVNESEDGMVSLALLCSFNRMRKHLKLAD 64
Query: 66 -VKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPF 124
K DV E+TVKAVA VL+N+ASLK+SEDG KVGR TELPK EEVIEQV+IRTIAASPF
Sbjct: 65 DTKPADVKEETVKAVAEVLKNAASLKLSEDGSKVGRITELPKPEEVIEQVEIRTIAASPF 124
Query: 125 QYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCGTALIEFSSXXXXXXXXXXXXXYAG 184
+Y +KLE+VE+FF QYAKVNSVRLPRHVGDKKFFCGTAL+EFSS YAG
Sbjct: 125 EYTVKLEEVESFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSDEEMQNVLKQKLVYAG 184
Query: 185 AELELKPKKDFDAERQKELEEYEKSHPSTGSNH-QNNSDADE 225
AELELKPK+DFDAER+KELE++EKS + GSNH ++N++ +E
Sbjct: 185 AELELKPKQDFDAEREKELEKHEKSRKNVGSNHEEDNTNTEE 226
>Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr7:48763422-48774734 |
20130731
Length = 424
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 8 NEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVK 67
+E+ K+++QVE+YFSD NL + + + +++ +G V ++++ SF +++ +
Sbjct: 111 DEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALIT----- 165
Query: 68 AEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 127
+ +A+VLRNS+ L VSEDGKK+ R + TE IE++ R + A D
Sbjct: 166 -------SHSQLANVLRNSSKLVVSEDGKKIKR--QYSPTESDIEELQSRIVIAENLPED 216
Query: 128 LKLEDVETFFSQYAKVNSVR 147
+++ FS V ++R
Sbjct: 217 HCHQNLMKVFSAVGSVKTIR 236
>Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr7:48763422-48774734 |
20130731
Length = 440
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 8 NEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVK 67
+E+ K+++QVE+YFSD NL + + + +++ +G V ++++ SF +++ +
Sbjct: 111 DEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALIT----- 165
Query: 68 AEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 127
+ +A+VLRNS+ L VSEDGKK+ R + TE IE++ R + A D
Sbjct: 166 -------SHSQLANVLRNSSKLVVSEDGKKIKR--QYSPTESDIEELQSRIVIAENLPED 216
Query: 128 LKLEDVETFFSQYAKVNSVR 147
+++ FS V ++R
Sbjct: 217 HCHQNLMKVFSAVGSVKTIR 236
>Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr7:48763422-48773797 |
20130731
Length = 363
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 8 NEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVK 67
+E+ K+++QVE+YFSD NL + + + +++ +G V ++++ SF +++ +
Sbjct: 111 DEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALIT----- 165
Query: 68 AEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 127
+ +A+VLRNS+ L VSEDGKK+ R + TE IE++ R + A D
Sbjct: 166 -------SHSQLANVLRNSSKLVVSEDGKKIKR--QYSPTESDIEELQSRIVIAENLPED 216
Query: 128 LKLEDVETFFSQYAKVNSVR 147
+++ FS V ++R
Sbjct: 217 HCHQNLMKVFSAVGSVKTIR 236
>Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain
protein, putative | HC | chr2:6438990-6443888 | 20130731
Length = 406
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 14 KVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTE 73
K+I+QVE+YFSD NLP D +M V +++G V + + SF +M++ +T
Sbjct: 106 KIIKQVEYYFSDENLPTDKYMLSLVKRNKEGFVPIPAIASFRKMKR-----------LTR 154
Query: 74 DTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDLKLEDV 133
D + +A L+ S+ L VS DGK+V R L E ++ + T+ A D E++
Sbjct: 155 DHL-FIAAALKESSLLVVSGDGKRVKRLNPLRFNE--VKDHKLYTVLAENLPEDHSRENI 211
Query: 134 ETFFSQYAKVNSVRL--PR-------HVGDKKFFCGT--ALIEFSS 168
F + + + PR H+ KF AL+E+ +
Sbjct: 212 RQIFQIAGNIKKLTINDPRSTAASAKHIKQDKFIGSKLHALVEYET 257
>Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain
protein | HC | chr4:34040137-34037050 | 20130731
Length = 404
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 6 TLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGD 65
LN + +K+++QVE+ FSD +L + +K +++ +G V + ++ S +++ +N
Sbjct: 94 VLNPDLQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPITVIASTKKIKSLVN--- 150
Query: 66 VKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQ 125
+ + +R+S+ L +S DGKKV R + P E+ E++ RT+ A
Sbjct: 151 ---------NIHLLTQAIRHSSKLVLSADGKKVKR--KHPFAEKEKEELMSRTVVAENLP 199
Query: 126 YDLKLEDVETFFSQYAKVNSVRL 148
D ++++ F + ++R+
Sbjct: 200 DDHSHQNLQKIFGVVGSIKTIRI 222