Miyakogusa Predicted Gene

Lj1g3v2036590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2036590.1 tr|A9T5D1|A9T5D1_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,48.94,2e-16,"Winged helix" DNA-binding domain,NULL;
La,RNA-binding protein Lupus La; no description,Winged
helix,gene.Ljchr1_pseudomol_20120830.path1.gene4765.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g026890.1 | RNA recognition motif protein | HC | chr1:8835...   147   2e-36

>Medtr1g026890.1 | RNA recognition motif protein | HC |
           chr1:8835899-8830191 | 20130731
          Length = 482

 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 82/94 (87%), Gaps = 1/94 (1%)

Query: 1   MRKTVSESEDGMVSLALLCSFNRMRQHLNLGD-VKAEDVTEDTVKAVAHVLRNSASLKVS 59
           + KTV+ESEDGMVSLALLCSFNRMR+HL L D  K  DV E+TVKAVA VL+N+ASLK+S
Sbjct: 33  LSKTVNESEDGMVSLALLCSFNRMRKHLKLADDTKPADVKEETVKAVAEVLKNAASLKLS 92

Query: 60  EDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQY 93
           EDG KVGR TELPK EEVIEQV+IRTIAASPF+Y
Sbjct: 93  EDGSKVGRITELPKPEEVIEQVEIRTIAASPFEY 126