Miyakogusa Predicted Gene

Lj1g3v1968360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1968360.1 Non Characterized Hit- tr|I1JUN1|I1JUN1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25875
PE,87.36,3e-19,seg,NULL; coiled-coil,NULL,CUFF.28247.1
         (94 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108910.1 | hypothetical protein | HC | chr3:50337688-5033...    73   5e-14
Medtr1g009640.1 | hypothetical protein | HC | chr1:1409585-14114...    62   1e-10

>Medtr3g108910.1 | hypothetical protein | HC |
           chr3:50337688-50335890 | 20130731
          Length = 234

 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 1   MPLFPVTXXXXXXXXXXXXXXXXXKARKVPXXXXXXXXX--LAEEKKQEDPVQMRHNRIP 58
           MPL PV                  KARK+P           LA++KKQED VQ+ H R+ 
Sbjct: 141 MPLLPVNEDRDDYDDVYYDYEDEEKARKMPSGSSSSSSSNSLADDKKQEDQVQIGHGRMH 200

Query: 59  ESYAAHMRLRLGSFKSRSFSLADLQ 83
           ESYAA MRLRL SFKSRS+SLADLQ
Sbjct: 201 ESYAAEMRLRLRSFKSRSYSLADLQ 225


>Medtr1g009640.1 | hypothetical protein | HC | chr1:1409585-1411442
           | 20130731
          Length = 245

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 38/46 (82%), Gaps = 2/46 (4%)

Query: 40  LAEEKKQEDPVQMR--HNRIPESYAAHMRLRLGSFKSRSFSLADLQ 83
           + E+K  ++ V MR  +NR+P+SYA HMRLRLGSFKSRSFSLADLQ
Sbjct: 181 MEEKKNPQEEVMMRQFNNRMPQSYANHMRLRLGSFKSRSFSLADLQ 226