Miyakogusa Predicted Gene

Lj1g3v1967260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1967260.1 CUFF.28234.1
         (351 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108805.1 | centromere protein O | HC | chr3:50286773-5028...   588   e-168
Medtr3g108805.2 | centromere protein O | HC | chr3:50286773-5028...   442   e-124

>Medtr3g108805.1 | centromere protein O | HC |
           chr3:50286773-50280461 | 20130731
          Length = 358

 Score =  588 bits (1515), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/352 (80%), Positives = 313/352 (88%), Gaps = 3/352 (0%)

Query: 2   ESDVEESLRKKPRKHHF-TADSSSRKQIELYTGRPHAVMGEVNFMQ--DDDNSLEITRAR 58
           ESD EES+RK+ R + F +AD  SR + E Y GR +A MGE+NFMQ  DDD+ L+ITRA+
Sbjct: 7   ESDAEESMRKRLRSNSFHSADYPSRNKFEQYAGRTYAPMGEMNFMQQQDDDSRLDITRAK 66

Query: 59  LGSLLKRHGDLTERLSRDSDKMIFERLQKEFEAARASQTEEICLDGEQWNDGLLATIRER 118
            GSLLKRH +L +RLSRDSDK+IFERL KEFEAARASQT+EI LDGEQWNDGLLAT+RE+
Sbjct: 67  FGSLLKRHENLADRLSRDSDKVIFERLIKEFEAARASQTQEIYLDGEQWNDGLLATVREQ 126

Query: 119 VHMEADRKAMPGDADILACPQEKITYKIGNKVICCLEGARIGIQYETSFAGDPCEFYHCV 178
           VHMEA+RKA+ GDAD+L   QEK+TYK GNK+ICCLEGARIGIQYETSFAG+ CEFYHCV
Sbjct: 127 VHMEAERKALSGDADVLTGHQEKVTYKTGNKIICCLEGARIGIQYETSFAGEICEFYHCV 186

Query: 179 LESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHIGDLLQAYVDRREQVRLVK 238
           LESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDH+GDLLQAYVDRREQVRL+K
Sbjct: 187 LESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHVGDLLQAYVDRREQVRLIK 246

Query: 239 ELYGNQISEMYHNLPHHMVEFVLDDFDCKVTVSLRYADLISVLPSRISVLAWPMLKKNTA 298
           ELYGNQI E+YH+LP+HM+EFVLDDFDCKVTVSLRY DLISVLP+RISVLAWPMLK N+ 
Sbjct: 247 ELYGNQIGELYHSLPYHMIEFVLDDFDCKVTVSLRYTDLISVLPTRISVLAWPMLKINST 306

Query: 299 ATLNRKEDGNFGSHPAPVRLHYAEDALRTMSLPEAYAEIVLNLPQALQQMYH 350
              N  EDG  GSHPAPVRL YAEDALRTMSLPEAYAEIVLNLPQALQQ+YH
Sbjct: 307 PIFNMMEDGISGSHPAPVRLSYAEDALRTMSLPEAYAEIVLNLPQALQQIYH 358


>Medtr3g108805.2 | centromere protein O | HC |
           chr3:50286773-50280465 | 20130731
          Length = 277

 Score =  442 bits (1138), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/270 (78%), Positives = 240/270 (88%), Gaps = 3/270 (1%)

Query: 2   ESDVEESLRKKPRKHHF-TADSSSRKQIELYTGRPHAVMGEVNFMQ--DDDNSLEITRAR 58
           ESD EES+RK+ R + F +AD  SR + E Y GR +A MGE+NFMQ  DDD+ L+ITRA+
Sbjct: 7   ESDAEESMRKRLRSNSFHSADYPSRNKFEQYAGRTYAPMGEMNFMQQQDDDSRLDITRAK 66

Query: 59  LGSLLKRHGDLTERLSRDSDKMIFERLQKEFEAARASQTEEICLDGEQWNDGLLATIRER 118
            GSLLKRH +L +RLSRDSDK+IFERL KEFEAARASQT+EI LDGEQWNDGLLAT+RE+
Sbjct: 67  FGSLLKRHENLADRLSRDSDKVIFERLIKEFEAARASQTQEIYLDGEQWNDGLLATVREQ 126

Query: 119 VHMEADRKAMPGDADILACPQEKITYKIGNKVICCLEGARIGIQYETSFAGDPCEFYHCV 178
           VHMEA+RKA+ GDAD+L   QEK+TYK GNK+ICCLEGARIGIQYETSFAG+ CEFYHCV
Sbjct: 127 VHMEAERKALSGDADVLTGHQEKVTYKTGNKIICCLEGARIGIQYETSFAGEICEFYHCV 186

Query: 179 LESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHIGDLLQAYVDRREQVRLVK 238
           LESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDH+GDLLQAYVDRREQVRL+K
Sbjct: 187 LESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHVGDLLQAYVDRREQVRLIK 246

Query: 239 ELYGNQISEMYHNLPHHMVEFVLDDFDCKV 268
           ELYGNQI E+YH+LP+HM+EFVLDDFD  V
Sbjct: 247 ELYGNQIGELYHSLPYHMIEFVLDDFDWLV 276