Miyakogusa Predicted Gene

Lj1g3v1966230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1966230.1 tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex
subunit 5b OS=Medicago truncatula GN=MTR_3g108790 PE,97.21,0,JAB/MPN
domain,JAB1/Mov34/MPN/PAD-1; COP9 SIGNALOSOME COMPLEX SUBUNIT 5,NULL;
EUKARYOTIC TRANSLATION,CUFF.28211.1
         (358 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108790.1 | COP9 signalosome complex subunit 5 | HC | chr3...   684   0.0  
Medtr8g006650.1 | COP9 signalosome complex subunit 5a-like prote...   138   9e-33
Medtr1g019930.1 | 26S proteasome non-ATPase regulatory subunit-l...   131   8e-31
Medtr2g017680.1 | 26S proteasome non-ATPase regulatory subunit-l...   131   1e-30
Medtr8g006645.1 | hypothetical protein | HC | chr8:779784-777659...   108   9e-24
Medtr8g006640.1 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | HC |...    71   2e-12

>Medtr3g108790.1 | COP9 signalosome complex subunit 5 | HC |
           chr3:50262107-50265078 | 20130731
          Length = 357

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/358 (92%), Positives = 336/358 (93%), Gaps = 1/358 (0%)

Query: 1   MEVXXXXXXAIAQQTWELENNIIPMDTPSDDSIFYYDEAGQNEFQREKPWANDPHYFKRV 60
           ME       AIAQQTWELENNIIPM+TPSDDSIF+YDEAGQ EFQR+KPWANDPHYFKRV
Sbjct: 1   MEASSSSSSAIAQQTWELENNIIPMETPSDDSIFHYDEAGQAEFQRDKPWANDPHYFKRV 60

Query: 61  KISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYE 120
           KISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYE
Sbjct: 61  KISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYE 120

Query: 121 YMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRT 180
           YMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRT
Sbjct: 121 YMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRT 180

Query: 181 VSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKXXXXX 240
           VSAGKVEIGAFRTYPEGYKP D+PISEYQTIPLNKIEDFGVHCKQYYSLDITYFK     
Sbjct: 181 VSAGKVEIGAFRTYPEGYKPADDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDS 240

Query: 241 XXXXXXWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLIAPTPRK 300
                 WNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFG L+APTPRK
Sbjct: 241 HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLVAPTPRK 300

Query: 301 KEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTETTSDPEPMIES 358
           KEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTE TSDPEPMIES
Sbjct: 301 KEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTE-TSDPEPMIES 357


>Medtr8g006650.1 | COP9 signalosome complex subunit 5a-like protein
           | HC | chr8:785629-782981 | 20130731
          Length = 77

 Score =  138 bits (347), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/77 (89%), Positives = 72/77 (93%), Gaps = 1/77 (1%)

Query: 282 ENQLAHSRFGSLIAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQA 341
           +N L  +RFG L+APTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQA
Sbjct: 2   KNLLGIARFGPLVAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQA 61

Query: 342 NKSRTETTSDPEPMIES 358
           NKSRTE TSDPEPMIES
Sbjct: 62  NKSRTE-TSDPEPMIES 77


>Medtr1g019930.1 | 26S proteasome non-ATPase regulatory subunit-like
           protein | HC | chr1:6086387-6082221 | 20130731
          Length = 313

 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 13/207 (6%)

Query: 58  KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDADSIIVMDAFALPVEGTETRVNAQA 116
           ++V IS+LALLKM+ H R+G  +EVMGLM G+  D  ++ V+D FA+P  GT   V A  
Sbjct: 33  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 92

Query: 117 DAYEY-MVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVI 175
             ++  M+D     KQ GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+
Sbjct: 93  HVFQTNMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVV 149

Query: 176 DPTRTVSAGKVEIGAFRTY-PEGYKPPDEPISEYQTIP-LNK--IEDFGVHC--KQYYSL 229
           DP ++V  GKV I AFR   P+      EP      +  LNK  I+   +H   + YYS+
Sbjct: 150 DPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSI 207

Query: 230 DITYFKXXXXXXXXXXXWNKYWVNTLS 256
            I Y K             K W + L+
Sbjct: 208 AINYRKNELEEKMLLNLHKKKWTDGLT 234


>Medtr2g017680.1 | 26S proteasome non-ATPase regulatory subunit-like
           protein | HC | chr2:5426885-5422810 | 20130731
          Length = 309

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 13/207 (6%)

Query: 58  KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDADSIIVMDAFALPVEGTETRVNAQA 116
           ++V IS+LALLKM+ H R+G  +EVMGLM G+  D  ++ V+D FA+P  GT   V A  
Sbjct: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88

Query: 117 DAYEY-MVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVI 175
             ++  M+D     KQ GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+
Sbjct: 89  HVFQTNMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVV 145

Query: 176 DPTRTVSAGKVEIGAFRTY-PEGYKPPDEPISEYQTIP-LNK--IEDFGVHC--KQYYSL 229
           DP ++V  GKV I AFR   P+      EP      +  LNK  I+   +H   + YYS+
Sbjct: 146 DPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSI 203

Query: 230 DITYFKXXXXXXXXXXXWNKYWVNTLS 256
            I Y K             K W + L+
Sbjct: 204 AINYRKNELEEKMLLNLHKKKWTDGLT 230


>Medtr8g006645.1 | hypothetical protein | HC | chr8:779784-777659 |
           20130731
          Length = 147

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/59 (93%), Positives = 58/59 (98%), Gaps = 1/59 (1%)

Query: 300 KKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTETTSDPEPMIES 358
           +++EESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTE TSDPEPMIES
Sbjct: 90  EEKEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTE-TSDPEPMIES 147


>Medtr8g006640.1 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | HC |
           chr8:774356-773324 | 20130731
          Length = 66

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/28 (100%), Positives = 28/28 (100%)

Query: 132 AGRLENVVGWYHSHPGYGCWLSGIDVST 159
           AGRLENVVGWYHSHPGYGCWLSGIDVST
Sbjct: 33  AGRLENVVGWYHSHPGYGCWLSGIDVST 60