Miyakogusa Predicted Gene

Lj1g3v1966200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1966200.1 Non Characterized Hit- tr|E3QIH3|E3QIH3_COLGM
Putative uncharacterized protein OS=Colletotrichum
gra,28.51,9e-19,seg,NULL; Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; "Winged helix" DNA-bindi,CUFF.28204.1
         (274 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g009890.1 | replication protein A 32 kDa subunit-like prot...   363   e-101
Medtr4g127950.1 | replication protein A 32 kDa subunit-like prot...   187   9e-48
Medtr4g127950.3 | replication protein A 32 kDa subunit-like prot...   174   8e-44
Medtr4g127950.2 | replication protein A 32 kDa subunit-like prot...   174   8e-44

>Medtr1g009890.1 | replication protein A 32 kDa subunit-like protein
           | HC | chr1:1581516-1585760 | 20130731
          Length = 272

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/273 (66%), Positives = 219/273 (80%), Gaps = 9/273 (3%)

Query: 4   SSTNFDANSAFSGGGFMXXXXXXXXXXXPAPLKSRDTQGLVPVTVRQISEASHSGDDKSN 63
           S++ FD+++AFSGGGFM           PAP KSRD+QGL+PVTV+QISEASHSGD+KSN
Sbjct: 3   SNSQFDSSNAFSGGGFMSSQPNDSS---PAPTKSRDSQGLIPVTVKQISEASHSGDEKSN 59

Query: 64  FVINGVGLTNVTLVGMVFEKVEKNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDGM 123
           F INGV LTNVTLVGMV+EK E+NT+VNFVLDDGTGRIKCRRWVN+T+D+KEM+++ +GM
Sbjct: 60  FSINGVDLTNVTLVGMVYEKTERNTDVNFVLDDGTGRIKCRRWVNDTFDSKEMEEVLNGM 119

Query: 124 YVRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLYSKVKVEGITGNPPSSD 183
           YVR+YG LKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHL SK+K+EGIT   PSS+
Sbjct: 120 YVRVYGSLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLRSKLKIEGITSALPSSN 179

Query: 184 LSL-IAARNAPN--QAASSNPLYA-HGVDQLKGCDKLVFDYLQQHSDTSDESGIHVDELS 239
            S+    RN  N  QA SSNP Y  +  D LK  DKLV +YL++HS    E+G+HVDELS
Sbjct: 180 SSMNTPVRNVSNGSQAPSSNPGYVQYSTDGLKDIDKLVLNYLEKHSHI--ETGVHVDELS 237

Query: 240 LQLRLPLDKIRSSLEVLKQEGYVYSTIDEDHHK 272
            +L+LPLDKI   L+   +EG +YSTID+ H+K
Sbjct: 238 RELKLPLDKIMLLLKTPLEEGVIYSTIDDSHYK 270


>Medtr4g127950.1 | replication protein A 32 kDa subunit-like protein
           | HC | chr4:53250236-53246018 | 20130731
          Length = 278

 Score =  187 bits (475), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 158/274 (57%), Gaps = 9/274 (3%)

Query: 5   STNFDANSAFSGGGFMXXXXXXXXXXXPAPLKSRDTQGLVPVTVRQISEASHSGDDKSNF 64
           +  FD N+AF+GGGFM             P K+R++Q L+P+T++QI+ A  S DD++  
Sbjct: 3   ANQFDGNAAFAGGGFMPSQTNQGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGL 62

Query: 65  VINGVGLTNVTLVGMVFEKVEKNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDGMY 124
            I+GVG+  VTLVG V  K  + TE  FVLDDGTG I+C +W++E  D   ++ I +GMY
Sbjct: 63  TIDGVGVNTVTLVGRVCNKSGQITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNGMY 122

Query: 125 VRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLYSKVKVEGITGNPPS--- 181
           VRLYG LK FQG + L  FS+RPVT+F+EI  HFI+CI+ HLY+  +++    + PS   
Sbjct: 123 VRLYGQLKGFQG-KTLSIFSLRPVTDFNEIASHFIECIYVHLYNS-RLQYTQASIPSQQH 180

Query: 182 --SDLSLIAARNAPNQAASSNPLYAHGVDQLKGCDKLVFDYLQQHSDTSDESGIHVDELS 239
             + + +   +    QA   N       +  K   +LV +YL   +    E G+    ++
Sbjct: 181 APNSIQITPTKGYQAQAIPPNQFSGQHNNGQKSVQELVLEYLALPTIRELEGGVFCGTIA 240

Query: 240 LQLRLPLDK-IRSSLEVLKQEGYVYSTIDEDHHK 272
            QL + LD  +  +L++L  EG +Y  + + H+K
Sbjct: 241 KQLGVSLDNDVIPALDLLSGEGVIYEGLPK-HYK 273


>Medtr4g127950.3 | replication protein A 32 kDa subunit-like protein
           | HC | chr4:53250236-53246037 | 20130731
          Length = 247

 Score =  174 bits (441), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 7/222 (3%)

Query: 5   STNFDANSAFSGGGFMXXXXXXXXXXXPAPLKSRDTQGLVPVTVRQISEASHSGDDKSNF 64
           +  FD N+AF+GGGFM             P K+R++Q L+P+T++QI+ A  S DD++  
Sbjct: 3   ANQFDGNAAFAGGGFMPSQTNQGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGL 62

Query: 65  VINGVGLTNVTLVGMVFEKVEKNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDGMY 124
            I+GVG+  VTLVG V  K  + TE  FVLDDGTG I+C +W++E  D   ++ I +GMY
Sbjct: 63  TIDGVGVNTVTLVGRVCNKSGQITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNGMY 122

Query: 125 VRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLYSKVKVEGITGNPPS--- 181
           VRLYG LK FQG + L  FS+RPVT+F+EI  HFI+CI+ HLY+  +++    + PS   
Sbjct: 123 VRLYGQLKGFQG-KTLSIFSLRPVTDFNEIASHFIECIYVHLYNS-RLQYTQASIPSQQH 180

Query: 182 --SDLSLIAARNAPNQAASSNPLYAHGVDQLKGCDKLVFDYL 221
             + + +   +    QA   N       +  K   +LV +YL
Sbjct: 181 APNSIQITPTKGYQAQAIPPNQFSGQHNNGQKSVQELVLEYL 222


>Medtr4g127950.2 | replication protein A 32 kDa subunit-like protein
           | HC | chr4:53250236-53246037 | 20130731
          Length = 247

 Score =  174 bits (441), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 7/222 (3%)

Query: 5   STNFDANSAFSGGGFMXXXXXXXXXXXPAPLKSRDTQGLVPVTVRQISEASHSGDDKSNF 64
           +  FD N+AF+GGGFM             P K+R++Q L+P+T++QI+ A  S DD++  
Sbjct: 3   ANQFDGNAAFAGGGFMPSQTNQGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGL 62

Query: 65  VINGVGLTNVTLVGMVFEKVEKNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDGMY 124
            I+GVG+  VTLVG V  K  + TE  FVLDDGTG I+C +W++E  D   ++ I +GMY
Sbjct: 63  TIDGVGVNTVTLVGRVCNKSGQITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNGMY 122

Query: 125 VRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLYSKVKVEGITGNPPS--- 181
           VRLYG LK FQG + L  FS+RPVT+F+EI  HFI+CI+ HLY+  +++    + PS   
Sbjct: 123 VRLYGQLKGFQG-KTLSIFSLRPVTDFNEIASHFIECIYVHLYNS-RLQYTQASIPSQQH 180

Query: 182 --SDLSLIAARNAPNQAASSNPLYAHGVDQLKGCDKLVFDYL 221
             + + +   +    QA   N       +  K   +LV +YL
Sbjct: 181 APNSIQITPTKGYQAQAIPPNQFSGQHNNGQKSVQELVLEYL 222