Miyakogusa Predicted Gene

Lj1g3v1965120.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1965120.2 Non Characterized Hit- tr|I1JUL7|I1JUL7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.723
PE=4,81.95,0,CRYPTOCHROME,NULL; FAD_binding_7,DNA photolyase,
FAD-binding/Cryptochrome, C-terminal; DNA_photolyas,CUFF.28199.2
         (303 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108700.1 | cryptochrome, DASH family protein | HC | chr3:...   509   e-144
Medtr1g088420.1 | photolyase/blue-light receptor PHR2 | HC | chr...   135   5e-32
Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    61   1e-09
Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    60   2e-09
Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    60   2e-09

>Medtr3g108700.1 | cryptochrome, DASH family protein | HC |
           chr3:50213300-50207366 | 20130731
          Length = 595

 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/278 (86%), Positives = 252/278 (90%), Gaps = 1/278 (0%)

Query: 1   MKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVVIPPEQ 60
           MKRG+NLLI+HGKPED+LPSL KA+GAHTVYAQKETCSEELNVE SV   LQQVV+P   
Sbjct: 166 MKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEELNVERSVNNRLQQVVVPSNG 225

Query: 61  SAGLINSSN-HPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFRKTVEAKCTVRSCIKLPA 119
           SAG   +SN HPKLQF+WGTTMYH DDLPFD  CLPDVYTQFRKT EAKC VRSCIKLP 
Sbjct: 226 SAGAATTSNSHPKLQFVWGTTMYHHDDLPFDVPCLPDVYTQFRKTAEAKCVVRSCIKLPT 285

Query: 120 SLGPPPLIEDWGSLPSLEQLGLCSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKET 179
           SLGPPP IEDWG LPSLEQLGL SQNV+KGMKFVGGETAALSR+YEYFWKKDLLKVYKET
Sbjct: 286 SLGPPPPIEDWGCLPSLEQLGLSSQNVNKGMKFVGGETAALSRIYEYFWKKDLLKVYKET 345

Query: 180 RNGMLGPDYSTKFSPWLASGSLSPRFIHEEVKRYENERLANSSTYWVLFELIWRDYFRFI 239
           RNGMLGPDYSTKFSPWLASGSLSPR IHEEVKRYENER ANSSTYWVLFELIWRDYFRF+
Sbjct: 346 RNGMLGPDYSTKFSPWLASGSLSPRLIHEEVKRYENERQANSSTYWVLFELIWRDYFRFL 405

Query: 240 SVKYGNSLFHLGGPRKVQNRWSQDRKLFESWRDGCTGY 277
           SVKYGNSLFH+GGPR VQ  WSQD+KLFESWRDGCTGY
Sbjct: 406 SVKYGNSLFHIGGPRNVQKNWSQDKKLFESWRDGCTGY 443


>Medtr1g088420.1 | photolyase/blue-light receptor PHR2 | HC |
           chr1:39533075-39538236 | 20130731
          Length = 456

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 143/271 (52%), Gaps = 39/271 (14%)

Query: 3   RGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVVIPPEQSA 62
           RG +L++R GKPE VL  LAK  GA  VY  +E   +E+ +E  +   +++  +      
Sbjct: 189 RGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKMKEENV------ 242

Query: 63  GLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFRKTVEAKCTVRSCIKLPASLG 122
                    ++++ WG+T+YH++DLPF    +P  Y  FR  V+ K  +R  I+    L 
Sbjct: 243 ---------EVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQ-KLEIRKTIEALDQLK 292

Query: 123 PPPLIED--WGSLPSLEQLGLC-SQNVSKGMKFV------GGETAALSRVYEYFWKKDLL 173
             P   D   G +P+L  LGL  S  +S+  K V      GGET AL R+  +  + +  
Sbjct: 293 GLPSRGDVQLGDIPTLMDLGLNPSATMSQDGKQVPNSSMTGGETEALQRLKRFAAECEAQ 352

Query: 174 --KVYKE-TRNGMLGPDYSTKFSPWLASGSLSPRFIHEEVKRYENERL-----------A 219
             K +K+  ++ + G ++S K SPWLA G LSPR + +E+K+  +  +           +
Sbjct: 353 SNKGFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDGGSS 412

Query: 220 NSSTYWVLFELIWRDYFRFISVKYGNSLFHL 250
            + T W++FEL+WRD+FRFI+ KY ++   L
Sbjct: 413 KTGTNWLMFELLWRDFFRFITKKYSSTKKQL 443


>Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 518

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 22/182 (12%)

Query: 123 PPPLIEDWGSLPSLEQLGLCSQNVSKGMK-------------FVGGETAALSRVYEYFWK 169
           P PL   + SLP +  LG C  +    +K             F GGE+ AL R+ E    
Sbjct: 180 PSPLATKYSSLPPVGPLGSCDISEVPTIKDLGYEDDQLEFSPFKGGESEALRRLEECMKD 239

Query: 170 KDLLKVYKETR---NGMLGPDYSTKFSPWLASGSLSPRFIHEEVKR-YENERLANSSTYW 225
           K  +  +++ +   +  L P  +T  SP+L  G LS R+ ++ ++  Y++     S    
Sbjct: 240 KTWVANFEKPKGNPSAFLKP-ATTILSPYLKFGCLSSRYFYQCIQDVYKSLPKHTSPPVS 298

Query: 226 VLFELIWRDYFRFISVKYGNSLFHLGGPRKV--QNRWSQDRKLFESWRDGCTGYSFYKKF 283
           +L +L+WRD+F   +  +G   F      ++  Q  W  D KL E+WRD  TG+ +    
Sbjct: 299 LLGQLLWRDFF--YTAAFGTPNFDSMKDNRICKQIPWKDDDKLLEAWRDAKTGFPWIDAI 356

Query: 284 TV 285
            V
Sbjct: 357 MV 358


>Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 491

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 22/182 (12%)

Query: 123 PPPLIEDWGSLPSLEQLGLCSQNVSKGMK-------------FVGGETAALSRVYEYFWK 169
           P PL   + SLP +  LG C  +    +K             F GGE+ AL R+ E    
Sbjct: 180 PSPLATKYSSLPPVGPLGSCDISEVPTIKDLGYEDDQLEFSPFKGGESEALRRLEECMKD 239

Query: 170 KDLLKVYKETR---NGMLGPDYSTKFSPWLASGSLSPRFIHEEVKR-YENERLANSSTYW 225
           K  +  +++ +   +  L P  +T  SP+L  G LS R+ ++ ++  Y++     S    
Sbjct: 240 KTWVANFEKPKGNPSAFLKP-ATTILSPYLKFGCLSSRYFYQCIQDVYKSLPKHTSPPVS 298

Query: 226 VLFELIWRDYFRFISVKYGNSLFHLGGPRKV--QNRWSQDRKLFESWRDGCTGYSFYKKF 283
           +L +L+WRD+F   +  +G   F      ++  Q  W  D KL E+WRD  TG+ +    
Sbjct: 299 LLGQLLWRDFF--YTAAFGTPNFDSMKDNRICKQIPWKDDDKLLEAWRDAKTGFPWIDAI 356

Query: 284 TV 285
            V
Sbjct: 357 MV 358


>Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 542

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 22/182 (12%)

Query: 123 PPPLIEDWGSLPSLEQLGLCSQNVSKGMK-------------FVGGETAALSRVYEYFWK 169
           P PL   + SLP +  LG C  +    +K             F GGE+ AL R+ E    
Sbjct: 180 PSPLATKYSSLPPVGPLGSCDISEVPTIKDLGYEDDQLEFSPFKGGESEALRRLEECMKD 239

Query: 170 KDLLKVYKETR---NGMLGPDYSTKFSPWLASGSLSPRFIHEEVKR-YENERLANSSTYW 225
           K  +  +++ +   +  L P  +T  SP+L  G LS R+ ++ ++  Y++     S    
Sbjct: 240 KTWVANFEKPKGNPSAFLKP-ATTILSPYLKFGCLSSRYFYQCIQDVYKSLPKHTSPPVS 298

Query: 226 VLFELIWRDYFRFISVKYGNSLFHLGGPRKV--QNRWSQDRKLFESWRDGCTGYSFYKKF 283
           +L +L+WRD+F   +  +G   F      ++  Q  W  D KL E+WRD  TG+ +    
Sbjct: 299 LLGQLLWRDFF--YTAAFGTPNFDSMKDNRICKQIPWKDDDKLLEAWRDAKTGFPWIDAI 356

Query: 284 TV 285
            V
Sbjct: 357 MV 358