Miyakogusa Predicted Gene

Lj1g3v1965120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1965120.1 tr|G7JCC2|G7JCC2_MEDTR Cryptochrome DASH
OS=Medicago truncatula GN=MTR_3g108710 PE=4
SV=1,67.95,0,CRYPTOCHROME,NULL; DNA_photolyase,DNA photolyase,
N-terminal; no description,Rossmann-like alpha/bet,CUFF.28199.1
         (266 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108700.1 | cryptochrome, DASH family protein | HC | chr3:...   339   1e-93
Medtr1g088420.1 | photolyase/blue-light receptor PHR2 | HC | chr...   144   8e-35
Medtr4g036495.1 | deoxyribodipyrimidine photolyase | HC | chr4:1...    63   3e-10
Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    59   6e-09
Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    59   6e-09
Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC | chr...    58   8e-09

>Medtr3g108700.1 | cryptochrome, DASH family protein | HC |
           chr3:50213300-50207366 | 20130731
          Length = 595

 Score =  339 bits (870), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/261 (65%), Positives = 192/261 (73%), Gaps = 16/261 (6%)

Query: 11  TLPFLSLKTTVTAA-------------PNSXXXXXXXXXXXXPAAITSSSEPVTLHQVPE 57
           TLPFLSL TT   +             P +                  S+   ++  VPE
Sbjct: 9   TLPFLSLTTTTLNSSKSTLTSILTITNPTTRFQFPNIAMNLCTTKSEPSASSSSMQHVPE 68

Query: 58  QDANN--NIIDQTFRKYTSNNAKRRGKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVY 115
            D+N    + +QTF++YTSNN KR GKGTAIVW RNDLRVLDNETLYKAW+SS+TLLPVY
Sbjct: 69  LDSNEMERVANQTFQRYTSNNTKRSGKGTAIVWFRNDLRVLDNETLYKAWLSSQTLLPVY 128

Query: 116 CVDPRLFATTYHFGFQKTGALRAQFLIECLADLRDNLMKRGVNLLIRHGKPEDVLPSLAK 175
           C+DPRLFATTYHFGF KTGALR QFL+ECL DLR NLMKRG+NLLI+HGKPED+LPSL K
Sbjct: 129 CIDPRLFATTYHFGFPKTGALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVK 188

Query: 176 AFGAHTVYAQKETCSEELNVESSVIKGLQQVVIPPEQSAGLINSSN-HPKLQFIWGTTMY 234
           A+GAHTVYAQKETCSEELNVE SV   LQQVV+P   SAG   +SN HPKLQF+WGTTMY
Sbjct: 189 AYGAHTVYAQKETCSEELNVERSVNNRLQQVVVPSNGSAGAATTSNSHPKLQFVWGTTMY 248

Query: 235 HLDDLPFDAACLPDVYTQFRK 255
           H DDLPFD  CLPDVYTQFRK
Sbjct: 249 HHDDLPFDVPCLPDVYTQFRK 269


>Medtr1g088420.1 | photolyase/blue-light receptor PHR2 | HC |
           chr1:39533075-39538236 | 20130731
          Length = 456

 Score =  144 bits (363), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 16/171 (9%)

Query: 84  TAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIE 143
           TAIVW RNDLRV DNE L  A   S ++LPVYC DP  +  +   GF KTG  RA FLIE
Sbjct: 119 TAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSS-GFDKTGPYRASFLIE 177

Query: 144 CLADLRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGL 203
            ++DLR NL  RG +L++R GKPE VL  LAK  GA  VY  +E   +E+ +E  +   +
Sbjct: 178 SVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKM 237

Query: 204 QQVVIPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFR 254
           ++  +               ++++ WG+T+YH++DLPF    +P  Y  FR
Sbjct: 238 KEENV---------------EVKYFWGSTLYHVEDLPFGLEDMPSNYGGFR 273


>Medtr4g036495.1 | deoxyribodipyrimidine photolyase | HC |
           chr4:13139480-13145090 | 20130731
          Length = 678

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)

Query: 84  TAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIE 143
           TAIVW ++DLR  D+  L  A  + ++L+P+Y  D R+ +        +      + ++ 
Sbjct: 38  TAIVWFKHDLRTDDHPGLLTAASNFQSLVPIYVFDHRILS--------RFSDEMLELVVF 89

Query: 144 CLADLRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGL 203
            + DLR +L  RG NL+I+ G  E+V+  LA    A  V+A++E   E   +   V   L
Sbjct: 90  AVRDLRKSLKGRGSNLMIKFGNAENVIHQLATQVKATCVFAEQEVEYELCVIMDVVNHRL 149

Query: 204 QQVVIPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPD 248
           + + +P             P+++ +W T  Y  + L   AA   D
Sbjct: 150 KSIKVP----------QGTPRIE-MWKTPFYDENVLQNLAASYDD 183


>Medtr4g011370.2 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 491

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 71  KYTSNNAKRRGKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFA---TTYH 127
           + TS+++   G G+ ++W R  +R+ DN  L  A      L P++ +DP         + 
Sbjct: 2   RLTSSSSMTLGSGS-MIWFRKGIRIHDNPALEYATRGCSNLYPLFVIDPHYMKPDPNAFS 60

Query: 128 FGFQKTGALRAQFLIECLADLRDNLMKRGVNLLIRHGKPEDVL 170
            G  + G  R  FL+E L DL  NL K G  LL+  G P +VL
Sbjct: 61  PGSSRAGLNRISFLLESLGDLDVNLKKIGSRLLVLKGDPSEVL 103


>Medtr4g011370.3 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 518

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 71  KYTSNNAKRRGKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFA---TTYH 127
           + TS+++   G G+ ++W R  +R+ DN  L  A      L P++ +DP         + 
Sbjct: 2   RLTSSSSMTLGSGS-MIWFRKGIRIHDNPALEYATRGCSNLYPLFVIDPHYMKPDPNAFS 60

Query: 128 FGFQKTGALRAQFLIECLADLRDNLMKRGVNLLIRHGKPEDVL 170
            G  + G  R  FL+E L DL  NL K G  LL+  G P +VL
Sbjct: 61  PGSSRAGLNRISFLLESLGDLDVNLKKIGSRLLVLKGDPSEVL 103


>Medtr4g011370.1 | UVR3 AtUVR3-like 6-4 DNA photolyase | HC |
           chr4:2747766-2742318 | 20130731
          Length = 542

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 71  KYTSNNAKRRGKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFA---TTYH 127
           + TS+++   G G+ ++W R  +R+ DN  L  A      L P++ +DP         + 
Sbjct: 2   RLTSSSSMTLGSGS-MIWFRKGIRIHDNPALEYATRGCSNLYPLFVIDPHYMKPDPNAFS 60

Query: 128 FGFQKTGALRAQFLIECLADLRDNLMKRGVNLLIRHGKPEDVL 170
            G  + G  R  FL+E L DL  NL K G  LL+  G P +VL
Sbjct: 61  PGSSRAGLNRISFLLESLGDLDVNLKKIGSRLLVLKGDPSEVL 103