Miyakogusa Predicted Gene

Lj1g3v1943910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943910.1 Non Characterized Hit- tr|I1JUK8|I1JUK8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,78.38,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL,CUFF.28227.1
         (638 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...   912   0.0  

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein |
           HC | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/640 (73%), Positives = 513/640 (80%), Gaps = 5/640 (0%)

Query: 1   MRYLRLRVLGETSGSQRDTSHLSESRHSSGNTSVRGKDDGRSRIRQLLDSSHLDDTRVND 60
           MRYLRL VLGETSGSQ+D+SHLSE++HSSGNTSVRG+DD R R RQLL+SSH+DDTR+ +
Sbjct: 210 MRYLRLCVLGETSGSQKDSSHLSENKHSSGNTSVRGRDDSRGRFRQLLESSHVDDTRMIE 269

Query: 61  ERSLDDPTLERGQDRNTSGQTCQEDAWIDDEPTDRLGEGADICEVDSDGEDRWHCRDIRD 120
           E S DD   ERGQD   SGQ CQED WID EP D L EGAD+CE DS+GE+RW C+DIRD
Sbjct: 270 EGSFDDQAPERGQD---SGQACQEDPWIDGEPPDGLSEGADVCEADSEGEERWRCKDIRD 326

Query: 121 GKTKHGEHEXXXXXXXXXXXXXXXXXXXXXKGRVNEGTVESEPVLSPPGPGSRLGQGCSV 180
           G+ K+G+HE                     KGRVNEG V+SEPVLS  G  SRLGQG SV
Sbjct: 327 GRIKYGDHEDNARDESSRRRTNRGWGRSRGKGRVNEGPVDSEPVLSSAGSASRLGQGRSV 386

Query: 181 RDRSIVRNADVRRVPDSK-NFARITSEVSVSERMDNDDCFQGCHIGSKDISDLVRKAVQA 239
           RDRS +RN DV+RVPDSK       SE  +SER DNDDCFQ C IGSKDISDLVRKAVQA
Sbjct: 387 RDRSSLRNGDVKRVPDSKKTLTSSISEALISEREDNDDCFQECRIGSKDISDLVRKAVQA 446

Query: 240 AETEARSANAPEEAVKVAGDAAADLVKTAATEEYNSTKDEELAVLAASRAASTVIDAASA 299
           AE EARSANAPEEAVK AGDAAADLVKTAA+EEY ST DEE +VLAASRAASTVIDAASA
Sbjct: 447 AEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSTNDEEASVLAASRAASTVIDAASA 506

Query: 300 VEVSRNSVCVNNEAENVSGRETESSEDVEDYFIPDIQSLANLREKYCIQCLELLGQYLEV 359
           VEVSR SVC+N E ENV+ RETES EDVEDYF+PD ++L  LREKYCIQCL LLG+Y+EV
Sbjct: 507 VEVSRRSVCINTETENVTSRETESIEDVEDYFLPDTRTLTQLREKYCIQCLALLGEYVEV 566

Query: 360 LGPVLHEKGVDVCLALLQQNSKHQEASKVALLLPDVMKLICALSAHKKFAALFVDRGGMQ 419
           LGPVLHEKGVDVCL LLQQNSKH E SKVA +LPDVMKLICAL+AH+KFAALFVDRGGMQ
Sbjct: 567 LGPVLHEKGVDVCLGLLQQNSKHHEPSKVAFVLPDVMKLICALAAHRKFAALFVDRGGMQ 626

Query: 420 KLLAVPRLAQTFFGLSSCLVTIGSLQGLMERVCALPSDVVYHVVELALQLLECNQDQARE 479
           KLLAVPR AQTFFGLSSCL TIGSLQG+MERVCALPSDV+YHVVELALQL+ECNQD AR+
Sbjct: 627 KLLAVPRTAQTFFGLSSCLFTIGSLQGIMERVCALPSDVIYHVVELALQLIECNQDLARK 686

Query: 480 NXXXXXXXXXXXXXXXXXXDSQDGLQKLLGLLNDVASVRSGVTXXXXXXXXXXXXRNDR- 538
           N                  DSQDGLQKLLGLLND AS+RSGVT            RNDR 
Sbjct: 687 NAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASIRSGVTSGALGSSNSGSLRNDRT 746

Query: 539 SSAEALTSSEKVVAYEACVALRKYFRAHLLLLVDSIRPNKSNRSAARNVPSIRAAYKPLL 598
           SSAE LTSSEK VAY  CVALR+YFRAHLL+L+DSIRPNKSNRS+ARN+PS RAAYKPL 
Sbjct: 747 SSAEVLTSSEKQVAYHTCVALRQYFRAHLLVLIDSIRPNKSNRSSARNIPSTRAAYKPLD 806

Query: 599 ISNEAIDAVFQQLQKDRKLGPAFVRTYWPAVEKFVSYNGH 638
           ISNEA+DAVF QLQKDRKLGPAFVRT W  VEKF++ NGH
Sbjct: 807 ISNEAMDAVFLQLQKDRKLGPAFVRTGWREVEKFLASNGH 846