Miyakogusa Predicted Gene

Lj1g3v1943900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943900.2 CUFF.28224.2
         (744 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...   905   0.0  

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein | HC
            | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/746 (65%), Positives = 536/746 (71%), Gaps = 22/746 (2%)

Query: 1    MQKLLAVPRLSQTFYGLSSCLVTIGSVQGLMEQVCALPSNLVYHVVELALQLLECNLXXX 60
            MQKLLAVPR +QTF+GLSSCL TIGS+QG+ME+VCALPS+++YHVVELALQL+ECN    
Sbjct: 625  MQKLLAVPRTAQTFFGLSSCLFTIGSLQGIMERVCALPSDVIYHVVELALQLIECNQDLA 684

Query: 61   XXXXXXXXXXXXXXXXXXXXXXSQDGLQKLLGLLNDVASVRSGVTXXXXXXXXXXXXRND 120
                                  SQDGLQKLLGLLND AS+RSGVT            RND
Sbjct: 685  RKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASIRSGVTSGALGSSNSGSLRND 744

Query: 121  R-SSAEALTSSEKLVAYETCVALQKYFRAHLLLLVDSISPDKSNRSAVINIRSITAAYKP 179
            R SSAE LTSSEK VAY TCVAL++YFRAHLL+L+DSI P+KSNRS+  NI S  AAYKP
Sbjct: 745  RTSSAEVLTSSEKQVAYHTCVALRQYFRAHLLVLIDSIRPNKSNRSSARNIPSTRAAYKP 804

Query: 180  LLISNEAINAVFQQLQKDRKLGPAFVRKNWPAVEKFLDCNGHTTMLELCQAPPQERYLHD 239
            L ISNEA++AVF QLQKDRKLGPAFVR  W  VEKFL  NGH TMLELCQAPP ERYLHD
Sbjct: 805  LDISNEAMDAVFLQLQKDRKLGPAFVRTGWREVEKFLASNGHITMLELCQAPPVERYLHD 864

Query: 240  LVEYALGILHIVTLVTRSRKMIVNTTLSNNRAGIAVILEAANIACDHVDPEIIQPALNVL 299
            L++YALG+L IVTLV  SRKMIVN TLS NRAGI+VIL+AANIA  HVDPEIIQPALNVL
Sbjct: 865  LLQYALGVLQIVTLVPSSRKMIVNATLSTNRAGISVILDAANIASSHVDPEIIQPALNVL 924

Query: 300  VNLVCPPPSITNKPSPVMQGQQFVSSQTSNGPPSETRDRNAEPNTIMIDRAVHVSSHIDP 359
            VNLVCPPPSI+NKP  V QGQQF SSQ SNG   ETRDRNAE N              DP
Sbjct: 925  VNLVCPPPSISNKPPAVSQGQQFPSSQASNGAL-ETRDRNAERNI------------TDP 971

Query: 360  RERNGESSAVDRSSVVALSAQSVNNTPQTPGPAASSGLVGDRRIXXXXXXXXXXXXXRLE 419
            RERNGESSAVDR +  AL+ QSVN TPQTP P+ASSGLVGDRRI             +LE
Sbjct: 972  RERNGESSAVDRGTAAALTTQSVNTTPQTPVPSASSGLVGDRRISLGAGARCAGLATQLE 1031

Query: 420  HGYRQAREAVRSNNGIKVLLHFLQPRIYLSPASVDCLRVLACRVLLGLARDDTIAHILTK 479
             GY QAREAVR+NNGIKVLLH LQPRIY  PA++DCLR LACRVLLGLARDDTIAHILTK
Sbjct: 1032 QGYHQAREAVRNNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTK 1091

Query: 480  LQVGKKLSELIRDSGSPTLGNEQGRWQAELSQAAIELIGIVTNLGCXXXXXXXXXXXXXX 539
            LQVGK+LSELIRDSGS TLG EQGRWQAELSQAAIELIGIV NLG               
Sbjct: 1092 LQVGKRLSELIRDSGSTTLGTEQGRWQAELSQAAIELIGIVANLGRASTLVASDAATPAL 1151

Query: 540  XXXXXXXXXXXXXXXYHSRELLLLVHEHLQAFGLAQTASTLLKEAQXXXX-XXXXXXXXA 598
                           Y SRELLLL+HEHLQA GL QTAS LLKEAQ             A
Sbjct: 1152 RRIERAAIAAATPITYPSRELLLLIHEHLQASGLGQTASLLLKEAQLTSLPSLLAPSSLA 1211

Query: 599  QQPTAQEASSTPIQWPSGRTPSGFLTRVPGFLTHKLKFNSIDEYSSLKSDAIXXXXXXXX 658
            QQPT QE SST IQWPSGRTPS       GFLT KLK+NS +E + LKSDA         
Sbjct: 1212 QQPTTQEVSSTQIQWPSGRTPS-------GFLTSKLKYNSKNEDACLKSDAGSARKKSLT 1264

Query: 659  XXXXXXXXXXHQPVDSQHTSVRKLLSTGREPSDTSIVETPSESAVKHNIDAGSQYKTPIT 718
                      HQ +DS+H+S RK L  G+E S+TS VE PSES+VKHN + GSQ+KTPIT
Sbjct: 1265 FSSSFGSHTRHQVIDSRHSSTRKWLRAGKESSETSTVENPSESSVKHNTETGSQFKTPIT 1324

Query: 719  LPSKRKLSDLKDIPMFSSSVKRLNVG 744
            LP+KRKLSDLKDIPMFSSS KRLNVG
Sbjct: 1325 LPTKRKLSDLKDIPMFSSSAKRLNVG 1350