Miyakogusa Predicted Gene

Lj1g3v1943880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943880.1 tr|J7MPV6|J7MPV6_9CHLO Methylenetetrahydrofolate
reductase OS=Polytomella sp. Pringsheim 198.80
GN=m,53.16,8e-17,METHYLENETETRAHYDROFOLATE REDUCTASE,NULL;
METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE
RELA,gene.g32334.t1.1
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g040105.1 | methylenetetrahydrofolate reductase | HC | chr...   140   3e-34
Medtr5g007060.1 | methylenetetrahydrofolate reductase | LC | chr...    49   8e-07

>Medtr1g040105.1 | methylenetetrahydrofolate reductase | HC |
           chr1:14723769-14718084 | 20130731
          Length = 595

 Score =  140 bits (353), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/77 (81%), Positives = 70/77 (90%)

Query: 1   MDRMVAHNPSFCDICREDGRSTADLTLEIANKMQNILCVETMMHLTCINIPVDKVDNALH 60
           MDRMVAHNPSFCDI    G +TADLTLEIANKMQNI+CVETMMHLTC N+PVDK+D+AL 
Sbjct: 39  MDRMVAHNPSFCDITWGAGGTTADLTLEIANKMQNIICVETMMHLTCTNMPVDKIDHALE 98

Query: 61  TIKSHGLQNVLALRGDP 77
           TIKS+G+QNVLALRGDP
Sbjct: 99  TIKSNGIQNVLALRGDP 115


>Medtr5g007060.1 | methylenetetrahydrofolate reductase | LC |
          chr5:1192998-1190936 | 20130731
          Length = 267

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 50 IPVDKVDNALHTIKSHGLQNVLALRGDP 77
          +PVDK+D+AL TIKS+ +QNVLALRGDP
Sbjct: 1  MPVDKIDHALETIKSNEIQNVLALRGDP 28