Miyakogusa Predicted Gene

Lj1g3v1943860.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943860.2 Non Characterized Hit- tr|I1HCP4|I1HCP4_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,41.07,0.000000000000003,FAMILY NOT NAMED,NULL,CUFF.28185.2
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108410.1 | hypothetical protein | HC | chr3:50101068-5010...   270   7e-73
Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC | chr4:44406871...   179   1e-45

>Medtr3g108410.1 | hypothetical protein | HC |
           chr3:50101068-50105833 | 20130731
          Length = 458

 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 148/192 (77%), Positives = 160/192 (83%), Gaps = 3/192 (1%)

Query: 1   MPPVSKTLDDSDKWVTVLCTKLTMWWPWVAEGEIPLKQSKGEEISKYKELDPSDRLLLLK 60
           +PPV K L DSDKWVT L  KLT WWPWVAEG+ PL  SKGEEISKYKELDP DRLLLLK
Sbjct: 79  IPPVGKALHDSDKWVTALSKKLTTWWPWVAEGKNPLVPSKGEEISKYKELDPLDRLLLLK 138

Query: 61  ALCEVRADQHDAVSYINDALKEGTQVSSFRKDALGRDGAGTSYWYDANSKGQSHRLYKET 120
           ALCEVRADQHD VSYINDALKEGTQ+SSFRK+A G DG  TSYWYDAN+K QSHRLY+ET
Sbjct: 139 ALCEVRADQHDVVSYINDALKEGTQISSFRKEAFGIDGTRTSYWYDANTKAQSHRLYRET 198

Query: 121 ITMSRSSPKAKVKGCLPLPTINFHWETLASNLEEFSEVAEKFSSSMSTLEFNVGKKLQSD 180
           IT S S+P  K KGCL LP  NF WETLA+NL+EFSEVAEK SSS S +E  +G +LQSD
Sbjct: 199 IT-SVSTPNRKGKGCLSLP--NFQWETLATNLDEFSEVAEKLSSSKSRVEIYMGDRLQSD 255

Query: 181 AIPVLEKLQKKK 192
           AIPVLEKLQKKK
Sbjct: 256 AIPVLEKLQKKK 267


>Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC |
           chr4:44406871-44399957 | 20130731
          Length = 755

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 128/193 (66%), Gaps = 2/193 (1%)

Query: 1   MPPVSKTLDDSDKWVTVLCTKLTMWWPWVAEGEIPLKQSKGEEISKYKELDPSDRLLLLK 60
           +PP+++     D W+TVLC KL  WW WVAEG++P+  S+G EI  YK LDP+ R+++LK
Sbjct: 177 IPPITRVALTRDTWITVLCRKLRDWWHWVAEGDLPIVASQGAEIEVYKSLDPAVRVIILK 236

Query: 61  ALCEVRADQHDAVSYINDALKEGTQVSSFRKDALGRDGAGTSYWYDANSKGQSHRLYKET 120
           ALC++R +Q D  ++I++++K G Q+S+FRK+ +G D  G SYWY+ +     HRLY+E 
Sbjct: 237 ALCDIRVEQEDIRNFIDNSVKHGVQLSTFRKERIGGDSNGISYWYE-DDPVIGHRLYREI 295

Query: 121 ITMSRSSP-KAKVKGCLPLPTINFHWETLASNLEEFSEVAEKFSSSMSTLEFNVGKKLQS 179
                  P K + +G   L   ++ WE +A+N +EF +V+EK  SS +  E +VGKKL+ 
Sbjct: 296 RKTEVIQPRKGRARGSQVLSNTSYQWEAVATNFDEFQDVSEKLFSSKNRTETSVGKKLKI 355

Query: 180 DAIPVLEKLQKKK 192
           D +P +EK+ KKK
Sbjct: 356 DMLPEIEKVHKKK 368