Miyakogusa Predicted Gene

Lj1g3v1943860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943860.1 Non Characterized Hit- tr|J3LTT9|J3LTT9_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,45.45,5e-19,seg,NULL; FAMILY NOT NAMED,NULL;
coiled-coil,NULL,CUFF.28185.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108410.1 | hypothetical protein | HC | chr3:50101068-5010...   290   7e-79
Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC | chr4:44406871...   103   2e-22

>Medtr3g108410.1 | hypothetical protein | HC |
           chr3:50101068-50105833 | 20130731
          Length = 458

 Score =  290 bits (743), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 160/262 (61%), Positives = 185/262 (70%), Gaps = 9/262 (3%)

Query: 2   SRSSPKAKVKGCLPLPTINFHWETLASNLEEFSEVAEKFSSSMSTLEFNVGKKLQSDAIP 61
           S S+P  K KGCL LP  NF WETLA+NL+EFSEVAEK SSS S +E  +G +LQSDAIP
Sbjct: 201 SVSTPNRKGKGCLSLP--NFQWETLATNLDEFSEVAEKLSSSKSRVEIYMGDRLQSDAIP 258

Query: 62  VLEKLQKKKERALKQKQRQEMLLKDFQKPYVSGTTRSCRTRKPISYTFEAYDQTIKEAIQ 121
           VLEKLQKKKERA+KQK+RQ+ LLKDFQ  + SG TRSCRTR+PI+Y+FEAYD+TIKEAIQ
Sbjct: 259 VLEKLQKKKERAMKQKERQDKLLKDFQNSFSSGNTRSCRTRRPINYSFEAYDRTIKEAIQ 318

Query: 122 LTNKR-KSPGASQDGNRGSEXXXXXXXXXXXXXXXXXXVPPLSESDDTGYKIENRGXXXX 180
           LTNKR KSP A QD NRGSE                    P+SESDD GY+IEN      
Sbjct: 319 LTNKRKKSPAADQDRNRGSE-DDFDIDVSADSDDSKRDTQPISESDDAGYEIENHS-SSE 376

Query: 181 XXXXXXXXMGRSEAQTSRAVSYPKGVRQSERLTGVPNHSVQENR---AKQRLRQRLTRNS 237
                      SE  +S AVSYPKGVR S+R+ GVP H+V E+    AKQR+RQR TRN+
Sbjct: 377 ENDEHVGQADNSEEHSSHAVSYPKGVRSSKRIAGVPGHTVPESMGLTAKQRVRQRPTRNT 436

Query: 238 AMESIVIPDSEDEQG-GKTDLS 258
           A+ES V+PDSEDE   GKTDLS
Sbjct: 437 AIESTVVPDSEDESDEGKTDLS 458


>Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC |
           chr4:44406871-44399957 | 20130731
          Length = 755

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 13/145 (8%)

Query: 7   KAKVKGCLPLPTINFHWETLASNLEEFSEVAEKFSSSMSTLEFNVGKKLQSDAIPVLEKL 66
           K + +G   L   ++ WE +A+N +EF +V+EK  SS +  E +VGKKL+ D +P +EK+
Sbjct: 305 KGRARGSQVLSNTSYQWEAVATNFDEFQDVSEKLFSSKNRTETSVGKKLKIDMLPEIEKV 364

Query: 67  QKKKERALKQKQRQEMLLKDFQKPYVSGTTRSCRTRKPISYTFEAYDQTIKEAIQLTNKR 126
            KKKER LK++ R+ +LL ++         R+ R RK ++YTF+ YD++I EAI++T ++
Sbjct: 365 HKKKERLLKKQHREALLLDNYLVTDGLSAGRALRDRKHVTYTFDDYDRSINEAIKVTKRK 424

Query: 127 KS-------------PGASQDGNRG 138
           ++             P A  +GN G
Sbjct: 425 QTSPEPMPRREPVAKPDAQTNGNHG 449