Miyakogusa Predicted Gene

Lj1g3v1932810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1932810.1 Non Characterized Hit- tr|I1MW23|I1MW23_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,34.56,0.000000000006,FAR1,FAR1 DNA binding domain,CUFF.28193.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g450850.1 | FAR1 DNA-binding domain protein | LC | chr3:17...    96   1e-20

>Medtr3g450850.1 | FAR1 DNA-binding domain protein | LC |
           chr3:17615614-17616669 | 20130731
          Length = 351

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 53/61 (86%)

Query: 68  SKVSEVENQRKRKTSRCNCGSKMVVTKRTIGFDEKWVVKYFYNHHNHELLDDKEVKFLPA 127
            K +EVE++RKRK+SRC+CG+K++V   TI  ++KWVVKYF N+HNHELLDDKEVKFLPA
Sbjct: 110 DKDNEVEDKRKRKSSRCSCGAKLLVNITTINSEKKWVVKYFNNNHNHELLDDKEVKFLPA 169

Query: 128 Y 128
           Y
Sbjct: 170 Y 170