Miyakogusa Predicted Gene

Lj1g3v1931410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1931410.1 Non Characterized Hit- tr|K3XDP0|K3XDP0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000007,44.9,2e-18,seg,NULL,
gene.Ljchr1_pseudomol_20120830.path1.gene4593.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108080.1 | embryo defective 2410 protein | HC | chr3:4994...   234   7e-62
Medtr3g108080.2 | embryo defective 2410 protein | HC | chr3:4994...   234   1e-61
Medtr1g010300.1 | embryo defective 2410 protein | HC | chr1:1902...   211   9e-55

>Medtr3g108080.1 | embryo defective 2410 protein | HC |
           chr3:49945022-49930645 | 20130731
          Length = 2007

 Score =  234 bits (597), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 138/291 (47%), Positives = 167/291 (57%), Gaps = 57/291 (19%)

Query: 2   KRVSREEAAVRMXXXXXXXXXXXXXXGYFVSGQHCGPSQGDDLEEIGSHSIEAAGSRPFF 61
           +R++REEAAV+               GYFVS      ++GDDL+E   HS  A  S  FF
Sbjct: 249 RRLAREEAAVQSAAERDYAARVAAELGYFVSDS----TKGDDLKENVGHSRGATDSSSFF 304

Query: 62  CTNEGKHDHHIMDTDIDYDMNHADLEKSFGVKFPGSGLNSWSRVMKGCWEHRFKRKATRS 121
             +EGKHDH  +D+ +DYDM HADLEK F VKFPG GL  WSRV+K  W+H+FKRK+ R 
Sbjct: 305 GMSEGKHDHQCVDSGVDYDMKHADLEKPFRVKFPGPGLQFWSRVIKRHWKHKFKRKSKRR 364

Query: 122 DISASGVALRRRILECSALAAHTYFCDRDQSHGKFGGPSTSSGCFHSINHGTHLVNSEVD 181
           DI+ASGVA++RRIL+CSA AA  YF  R QS GK G PS+SS CF S N  T+LVN +VD
Sbjct: 365 DIAASGVAIKRRILKCSASAARAYF--RGQSQGKSGEPSSSSECFCSTNLDTNLVNDDVD 422

Query: 182 RRIPESVASXXXXXXXXXXXXTQSTDLETWSPSVNENVSDHSDCLKTVSDLNLQTRGESN 241
           +                                + E V+D  D                 
Sbjct: 423 K--------------------------------ITEYVADGDD----------------- 433

Query: 242 CESNEDVAERVDGVNVLQSEGRTNTLPITLDSVHFRGATVMLLAYGDREVR 292
              N+ VAE VDGV+ LQ E  T+TLP+ LDSVHFRGATVMLLAYGD EVR
Sbjct: 434 --DNDIVAEHVDGVDALQPEDLTSTLPVMLDSVHFRGATVMLLAYGDSEVR 482


>Medtr3g108080.2 | embryo defective 2410 protein | HC |
           chr3:49945038-49933564 | 20130731
          Length = 1649

 Score =  234 bits (596), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/291 (47%), Positives = 167/291 (57%), Gaps = 57/291 (19%)

Query: 2   KRVSREEAAVRMXXXXXXXXXXXXXXGYFVSGQHCGPSQGDDLEEIGSHSIEAAGSRPFF 61
           +R++REEAAV+               GYFVS      ++GDDL+E   HS  A  S  FF
Sbjct: 249 RRLAREEAAVQSAAERDYAARVAAELGYFVSDS----TKGDDLKENVGHSRGATDSSSFF 304

Query: 62  CTNEGKHDHHIMDTDIDYDMNHADLEKSFGVKFPGSGLNSWSRVMKGCWEHRFKRKATRS 121
             +EGKHDH  +D+ +DYDM HADLEK F VKFPG GL  WSRV+K  W+H+FKRK+ R 
Sbjct: 305 GMSEGKHDHQCVDSGVDYDMKHADLEKPFRVKFPGPGLQFWSRVIKRHWKHKFKRKSKRR 364

Query: 122 DISASGVALRRRILECSALAAHTYFCDRDQSHGKFGGPSTSSGCFHSINHGTHLVNSEVD 181
           DI+ASGVA++RRIL+CSA AA  YF  R QS GK G PS+SS CF S N  T+LVN +VD
Sbjct: 365 DIAASGVAIKRRILKCSASAARAYF--RGQSQGKSGEPSSSSECFCSTNLDTNLVNDDVD 422

Query: 182 RRIPESVASXXXXXXXXXXXXTQSTDLETWSPSVNENVSDHSDCLKTVSDLNLQTRGESN 241
           +                                + E V+D  D                 
Sbjct: 423 K--------------------------------ITEYVADGDD----------------- 433

Query: 242 CESNEDVAERVDGVNVLQSEGRTNTLPITLDSVHFRGATVMLLAYGDREVR 292
              N+ VAE VDGV+ LQ E  T+TLP+ LDSVHFRGATVMLLAYGD EVR
Sbjct: 434 --DNDIVAEHVDGVDALQPEDLTSTLPVMLDSVHFRGATVMLLAYGDSEVR 482


>Medtr1g010300.1 | embryo defective 2410 protein | HC |
           chr1:1902541-1916763 | 20130731
          Length = 2205

 Score =  211 bits (536), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/267 (48%), Positives = 154/267 (57%), Gaps = 14/267 (5%)

Query: 2   KRVSREEAAVRMXXXXXXXXXXXXXXGYFVSGQHCGPSQGDDLEEIGSHSIEAAGSRPFF 61
           +R++REE   R               GYFVS + CG S+GD  +EI S SIE + + PFF
Sbjct: 279 RRLAREEGGARWEIERDEAAREAAEVGYFVSERRCGASEGDGAKEIPSSSIELSEATPFF 338

Query: 62  CTNEGKHDHHIMDTDIDYDMNHADLEKSFGVKFPGSGLNSWSRVMKGCWEHRFKRKATRS 121
           C + GKHDH  MDT +DYD  HADLEK+FGVKF GSG   WSRV+ G  ++RFKRKA  S
Sbjct: 339 CVDGGKHDHRFMDTGVDYDTKHADLEKAFGVKFLGSGFRFWSRVLSGHRKNRFKRKANGS 398

Query: 122 DISASGVALRRRILECSALAAHTYFCDRDQSHGKFGGPSTSSGCFHSINH-GTHLVNSEV 180
            I ASGVA ++R+ E SA AA  YF  RDQS GK G P++SS CF  +NH   H   SEV
Sbjct: 399 KIYASGVATKKRMFERSASAARAYF--RDQSQGKDGEPASSSECFQFMNHDDAHAAVSEV 456

Query: 181 DRRIPESVASXXXXXXXXXXXXTQSTDLETWSPSVNENVSDHSDCLKTVSDLNLQTRGES 240
           D    +SV               +S DL  WSPSV+ NV   SD LK V + NLQT GE 
Sbjct: 457 DGN-AKSVTIGDENISDDSQSAARSRDLGIWSPSVDGNVGGQSDYLKFVREPNLQT-GEK 514

Query: 241 NCE---SNEDVA------ERVDGVNVL 258
           N E   S EDVA       R D + VL
Sbjct: 515 NFENLQSCEDVAVPANANSRTDKIEVL 541



 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 235 QTRGESNCESNEDVAERVDGVNVLQSEGRTNTLPITLDSVHFRGATVMLLAYGDREVR 292
           + + +++ +  + +AE VDG++ +QSEG    LP+ LDSVHF+GATVMLLAYGD EVR
Sbjct: 614 KLKSDASVKVEDIIAEPVDGLDFVQSEGINKALPVILDSVHFKGATVMLLAYGDVEVR 671