Miyakogusa Predicted Gene

Lj1g3v1931390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1931390.1 Non Characterized Hit- tr|D7SUI6|D7SUI6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46,0.00000000000002,seg,NULL,CUFF.28181.1
         (301 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108040.1 | PsbP domain protein | HC | chr3:49920401-49924...   362   e-100

>Medtr3g108040.1 | PsbP domain protein | HC | chr3:49920401-49924487
           | 20130731
          Length = 293

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 196/223 (87%), Gaps = 5/223 (2%)

Query: 84  SPVTLA-----EEEPNMATFVDETNAYSYMYPLEVPSKKFVFKWVESRKPERYSSAAPLS 138
           SP+++A     E++  MA+F+DE NAYSY+YPLE+PSKKFVFKWVESRKPERYSSAAPLS
Sbjct: 71  SPISVALAGEEEQDHKMASFLDEVNAYSYLYPLELPSKKFVFKWVESRKPERYSSAAPLS 130

Query: 139 PNARLRIVSERVDIIDNVLISVTIGPPNPGLVKLNDKKKWTAKDVADSVLADKSTLRVTS 198
           PNARLRIVSERVD+ DN++ISVTIGPP+  L+ L DK KWTAKDV DSVLADKS+LRVTS
Sbjct: 131 PNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTS 190

Query: 199 SQRLSESSVLDTHTGEIDGEPYWYYEYLVRKSPTNLAGEPNIFRHYLASTAERDGYLYSV 258
            QR +ESSVLD H+ EIDGEPYWYYEYL+RKSP +++ E  I+RHY+ASTAERDGYLYS+
Sbjct: 191 VQRSAESSVLDAHSNEIDGEPYWYYEYLIRKSPNSMSEESGIYRHYVASTAERDGYLYSI 250

Query: 259 SVSALSPQWKTMGPYLEKTVSSFRLISPTENYVPPYKDPWRFW 301
           S S LSPQWK MGP LEKTVSSFRL+SPTENYVPPYKDPWRFW
Sbjct: 251 SASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW 293