Miyakogusa Predicted Gene

Lj1g3v1931370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1931370.1 tr|G7JBQ4|G7JBQ4_MEDTR Transcription elongation
factor A protein OS=Medicago truncatula
GN=MTR_3g108,68.35,0,TFIIS_CENTRAL,Transcription elongation factor
S-II, central domain; TFIIS_M,Transcription elongation,CUFF.28179.1
         (1144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108010.1 | SPOC domain/transcription elongation factor S-...  1410   0.0  
Medtr1g063780.1 | SPOC domain/transcription elongation factor S-...    67   8e-11
Medtr3g093800.1 | transcription elongation factor S-II, putative...    61   7e-09

>Medtr3g108010.1 | SPOC domain/transcription elongation factor S-II,
            putative | HC | chr3:49909087-49915326 | 20130731
          Length = 1132

 Score = 1410 bits (3650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 766/1169 (65%), Positives = 875/1169 (74%), Gaps = 65/1169 (5%)

Query: 1    MSNNLVSQPMPSMPMAQLEPILNKVDSSGRQMELGILGGPVSTDPMSRPPGASNDHAGLS 60
            MSNNLVS+ + S  MAQLEPI+NK D S     +G+L  PVSTD MS+  GASN    +S
Sbjct: 4    MSNNLVSESVTSSQMAQLEPIMNKADGS-----MGLLR-PVSTDSMSQNQGASNGEP-VS 56

Query: 61   SGRVEXXXXXXXXXXXXXSHRGLHQLHLPSRQSVQ-------VGAQQLSATTPKRKAPME 113
             G                   G+H++ + ++QS+Q       +GA Q+SA  PKRKA ME
Sbjct: 57   QG---LPLSNRLSGQVGGGDMGMHRVIMQNKQSMQMGAAPNNLGAHQVSAA-PKRKATME 112

Query: 114  LSPSGSVVS-NKRVAQMGPRPWLQQGSNASNRGSSQMQSPSNGSRPQQHSGASSKRKTQM 172
            L PSGS ++ +KR   M  RPW+ QGSN+S + + +MQS SN SR   HS AS KRKTQ 
Sbjct: 113  L-PSGSFITPSKREKPMAQRPWMPQGSNSSTKIAPRMQSSSNLSR-VNHSAASGKRKTQA 170

Query: 173  MDSTSGKAGTPRSSNSKNQNTQLKQSPRAQSESSESVRSKMRESXXXXXXXVSQQEKPLA 232
             D+TSGK  TPRSSNSKNQN QLK+S + Q+ESSESVRSKMRES       VSQQ+KPL 
Sbjct: 171  -DNTSGKPATPRSSNSKNQNAQLKESSKVQTESSESVRSKMRESLAAALALVSQQDKPLV 229

Query: 233  SSENTPNSDGNAQGKLEDSSDCAGSASAPVVTASEQRQEISQSANSSFSATVSVDHEMGE 292
            S+++ PN+  N       SS CAGSASA   TA EQ+QEI Q  NSS +   SVDH MGE
Sbjct: 230  SNDDKPNNAAN-------SSQCAGSASASADTAPEQKQEICQPVNSSLAGADSVDHVMGE 282

Query: 293  QGKNTASHEDLSEKCKDYEVGSTSVSNNENILSSMEVLNCDKPDFQSSYTLTTDDVPFSD 352
            +  ++ S E  SEK KDY+ G T+VSNNE++LSS      DK DFQS+YTLTTDDVPFSD
Sbjct: 283  EHLDSTSTEGFSEKPKDYQAGFTNVSNNEDMLSS------DKQDFQSNYTLTTDDVPFSD 336

Query: 353  SFFMKDDLLQGNGLSWVLSDMVE-VDLGNQREGQTNIELRSEPDETGGASKEATPLPELL 411
            SFF+KD+LLQGNGLSWVLSDM   V + +Q E QT IE + EP+ETGG  +E  PLPELL
Sbjct: 337  SFFVKDELLQGNGLSWVLSDMDHMVVIDDQSESQTTIEKKLEPEETGGVCREVVPLPELL 396

Query: 412  ASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEEL 471
            AS+IEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFG+I PEQLCSMTAEEL
Sbjct: 397  ASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKILPEQLCSMTAEEL 456

Query: 472  ASKELSQWRIAKAEEFDKMVVLPDSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEEVSGGT 531
            ASKELS+WRIAKAEEFDK+ VLPDSDVD RRLV+KTHKGEFQVEV+HEDNVPVEEVSGG 
Sbjct: 457  ASKELSEWRIAKAEEFDKIKVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVPVEEVSGGK 516

Query: 532  ASAVRSQTTKKVVEATSPSRADIIKRDVNTGGEKNNLQKDNSFSITLSSNDGTDPMQGLM 591
             S VR Q  KK VE TSPS+ D++K DVNT  EK++LQ DN FSIT+SSNDGTDPM+GLM
Sbjct: 517  NSVVRRQPVKKDVEGTSPSKPDVVKSDVNTDNEKSSLQTDNQFSITISSNDGTDPMEGLM 576

Query: 592  T-DDALKDPDFLPPIVSLDEFMESLDTEPPFENLPVESGKVTPIXXXXXXXXXXXXXXXX 650
            T DDALKDP+FLPPIVSLDEFMESL++EPPFENLPVESGK  PI                
Sbjct: 577  TDDDALKDPNFLPPIVSLDEFMESLNSEPPFENLPVESGKA-PISEEDVYGVGSKSKSSD 635

Query: 651  LTPSEKADVTTDKSEKFQSTRVNSDVEEEKKVNAESGDSLSN---GKNQADMKPTDDHAK 707
            LTPSE+ DV+  KS+K QST    D EEEKKVNA++G   S+   G++++D KPTD H+K
Sbjct: 636  LTPSEQDDVSASKSDKLQST----DAEEEKKVNADAGSISSDAKHGESRSDTKPTDGHSK 691

Query: 708  ERSTDDMKSASNDAVVRPSQLHAEQKFGNDNVYSKTAVLIKGECLWEGMLQLNISTTHSV 767
            E S D  KS SNDA +R SQ HAE++ G D V SKT V IKGECLWEGMLQ NISTT SV
Sbjct: 692  EMSPDGKKSTSNDAELRASQFHAEERHGKDKV-SKTTVPIKGECLWEGMLQPNISTTDSV 750

Query: 768  ISIFKSGEKTSTKDWPGFLDIKGRVRLEPFEKFLQELPQSRTRAIMVLHFVSKGSSPEEQ 827
            ISIFKSGEKTSTKDWPGFL+IKGRVRL+ FEKFL+ELPQSR+RAIMV HF+SKG +PEEQ
Sbjct: 751  ISIFKSGEKTSTKDWPGFLEIKGRVRLDAFEKFLRELPQSRSRAIMVSHFISKGITPEEQ 810

Query: 828  STIKEVAESYITDERVGFAEPVNGVELYFCPPHKKTVEMLGKILPKEQIEAVNSIDNGLI 887
            +T++EVA+SYI DERVGFAEPV+GVELYFCPPHKKTVEML KILPKEQIEAVNSIDNGLI
Sbjct: 811  ATLREVADSYILDERVGFAEPVHGVELYFCPPHKKTVEMLSKILPKEQIEAVNSIDNGLI 870

Query: 888  GVVVWRKTNLTSTISPT----HKHSSKRQSSFNRRQQDTNVNANNTHKAVPSKGIKAAEN 943
            G++VWRKTN+T++ISPT    HKHSSKRQ   +RRQQDTNVNAN+TH AVPS G K    
Sbjct: 871  GIIVWRKTNITTSISPTAQSHHKHSSKRQ-ILSRRQQDTNVNANSTHNAVPSMGFKTT-- 927

Query: 944  XXXXXXXXXXXXXXXXXXXXXTTRVEDDLPEFNFSRSSNPPPHLVQKPLGPGMVPFHSVS 1003
                                   RVEDDLPE+NFS SSNP  HLVQK +GP MV  HSV 
Sbjct: 928  ---VSEPPSGDDDDVPPGFGPPARVEDDLPEYNFSGSSNPSSHLVQKHMGPSMVTSHSVV 984

Query: 1004 KTPSRPAEQMRELVLKYGQNQANVSSVNWQDKFGGTIQPWNDDDDDIPEWQPQ-SSLNQF 1062
            +TPSRPA+QMRELV KYGQN+  V+SVNWQDKFGG+IQPWNDDDDDIPEWQPQ ++ NQF
Sbjct: 985  QTPSRPAQQMRELVHKYGQNKTTVTSVNWQDKFGGSIQPWNDDDDDIPEWQPQINNQNQF 1044

Query: 1063 PPQQTMRNSHLRPHTQNQPFVGSP----MAAQYLQQAPMNVNHVQSNLNPQWVPRSQGDN 1118
            PPQQTM N HLRPH  NQ + G P    M  QYL Q PMNV HVQ N  PQWVP  QG+N
Sbjct: 1045 PPQQTMNNFHLRPHVVNQSYAGLPQQSIMPTQYL-QPPMNVTHVQQNFGPQWVPSIQGNN 1103

Query: 1119 TQPSGG--YGAPAQGTG-WSQHVSRSRRF 1144
            TQPS    YG P QGT  WSQHVSRSRR 
Sbjct: 1104 TQPSAAPPYGTPTQGTTPWSQHVSRSRRL 1132


>Medtr1g063780.1 | SPOC domain/transcription elongation factor S-II
           | LC | chr1:28001762-28001111 | 20130731
          Length = 73

 Score = 67.4 bits (163), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 752 LWEGMLQLNISTTHSVISIFKSGEKTSTKDWPGFLDIKGRVRLEPFEKFLQELPQSR 808
           LW+G L+LN   T S I+ F+S EK S K W  ++++KGRV+L  FEK++QELP+SR
Sbjct: 16  LWDGYLRLNSVLTVSTIAFFQSAEKMSNK-WSKYVEVKGRVKLHNFEKYIQELPRSR 71


>Medtr3g093800.1 | transcription elongation factor S-II, putative |
           HC | chr3:42860884-42857714 | 20130731
          Length = 369

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 47/71 (66%)

Query: 408 PELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMT 467
           P  +A  +E+ LF+ +G  N   K K RSL+FNLKD+ NP+ R +V+ G + P++L  M+
Sbjct: 233 PIRVAVTVESVLFENWGPSNGAQKVKYRSLMFNLKDQKNPDFRRKVLLGTVEPQRLAVMS 292

Query: 468 AEELASKELSQ 478
           + E+AS++  Q
Sbjct: 293 SAEMASEQRKQ 303