Miyakogusa Predicted Gene

Lj1g3v1914980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1914980.1 Non Characterized Hit- tr|H9MAG0|H9MAG0_PINLA
Uncharacterized protein (Fragment) OS=Pinus
lambertian,76,0.000000000000005, ,CUFF.28124.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g107860.1 | hypothetical protein | HC | chr3:49762030-4976...   321   2e-88

>Medtr3g107860.1 | hypothetical protein | HC |
           chr3:49762030-49766033 | 20130731
          Length = 192

 Score =  321 bits (823), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 164/183 (89%), Gaps = 1/183 (0%)

Query: 1   MSFGSSLLSPPHAFWLSFSKSTTSRFKAAASNVPDFLSADWFESRKKRPFGPRLDFSAED 60
           MSFG  L S P    +   ++ TS FK +A NVPDFLSADWFESRKK+PFGP+LDF+AED
Sbjct: 1   MSFGCCLFSSPPPHLVCRKRNRTSLFKVSA-NVPDFLSADWFESRKKKPFGPKLDFTAED 59

Query: 61  AVHYQLEALKYNDQPRQDYGIEVMYRFGGFDPFERSTYFGPFFDLGQFERFRRIFHHSTY 120
           AVH+QLEALKYNDQPRQDYGIEVMYRF GFDPFERSTYFGPFFDLGQFERFRRIFHHSTY
Sbjct: 60  AVHHQLEALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFERFRRIFHHSTY 119

Query: 121 RVLLGHKERKIMSSLFVEENKYMQRVWIRGSRPEEEEIFQLTMTQRVGGCWDGYWLTESL 180
           RVLLGHKERKIMSSLFVEENKY QR+W+RGSRPEEEEIFQ TM QRVGGCWDGYWLTES+
Sbjct: 120 RVLLGHKERKIMSSLFVEENKYKQRIWVRGSRPEEEEIFQFTMVQRVGGCWDGYWLTESV 179

Query: 181 LHD 183
           LHD
Sbjct: 180 LHD 182