Miyakogusa Predicted Gene

Lj1g3v1911730.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1911730.1 tr|G7JB32|G7JB32_MEDTR Rna-dependent RNA
polymerase OS=Medicago truncatula GN=MTR_3g107390 PE=4
SV=1,81.15,0,RNA-DEPENDENT RNA POLYMERASE,RNA-dependent RNA
polymerase, eukaryotic-type; RdRP,RNA-dependent RNA p,CUFF.28114.1
         (1201 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | ...  2049   0.0  
Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | ...  2049   0.0  
Medtr1g032630.3 | RNA-directed RNA polymerase | HC | chr1:116348...   608   e-174
Medtr1g032630.1 | RNA-directed RNA polymerase | HC | chr1:116348...   608   e-174
Medtr1g032720.1 | RNA-directed RNA polymerase | LC | chr1:116909...   590   e-168
Medtr1g032610.1 | RNA-directed RNA polymerase | HC | chr1:116260...   587   e-167
Medtr1g032610.2 | RNA-directed RNA polymerase | HC | chr1:116260...   587   e-167
Medtr1g032590.1 | RNA-directed RNA polymerase | HC | chr1:116144...   569   e-162
Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | ...   564   e-160
Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | ...   563   e-160
Medtr1g032630.2 | RNA-directed RNA polymerase | HC | chr1:116348...   413   e-115
Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | ...   412   e-114
Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | ...    64   8e-10

>Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | HC |
            chr3:49541314-49536090 | 20130731
          Length = 1203

 Score = 2049 bits (5309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 976/1203 (81%), Positives = 1081/1203 (89%), Gaps = 2/1203 (0%)

Query: 1    MDLGGSEKESVVT--QVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEF 58
            MDL GS K+SV+T  QVSIGGFDS+VKA DL  +LE++IG V RCRLKTS TPPESYPEF
Sbjct: 1    MDLEGSVKDSVLTTTQVSIGGFDSDVKASDLVSYLESKIGYVDRCRLKTSCTPPESYPEF 60

Query: 59   NVADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPY 118
             + DT  ++ TDDYKKV PHAFVHF LP+SATEAL+A+G CDL+  GK LKVISGPQNP 
Sbjct: 61   TMTDTKQIEITDDYKKVAPHAFVHFTLPDSATEALNAAGRCDLILNGKVLKVISGPQNPN 120

Query: 119  FLNQRRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDT 178
            FLNQRRR E PFK+SDV+VEIGTLVSP +F VAWRG +KGVN LVDPFD++C++ F+RDT
Sbjct: 121  FLNQRRRTEAPFKMSDVIVEIGTLVSPADFTVAWRGCDKGVNFLVDPFDKICKICFNRDT 180

Query: 179  AFSIKQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIE 238
            AFS K   K+AVIKCDFKV F++RDI E++RYDDTS+ VVLL LASSPLVWYRTADDDI+
Sbjct: 181  AFSFKGIGKQAVIKCDFKVGFLIRDIEEIQRYDDTSHLVVLLRLASSPLVWYRTADDDID 240

Query: 239  ESVSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFP 298
            ESV+ DLLDDDDPWIRTTDFTPSGAIGRCN+YRISIPPRHGAKL KA+ YL  QRV   P
Sbjct: 241  ESVTIDLLDDDDPWIRTTDFTPSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIP 300

Query: 299  LKRPLRIQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVL 358
            LKRP +IQ+EP+FGVPMSD FFYI  Q+ I+FDIMFL+NA++H+GI N YSLS++FFE+L
Sbjct: 301  LKRPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNKFFELL 360

Query: 359  RNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVRRLVI 418
            +NQP++VNVAALKH+C+YK PVFDAAKRL+ VQ+WLLRNPK YQ SKQ+DD++EVRRLV+
Sbjct: 361  KNQPKDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVV 420

Query: 419  TPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 478
            TPT+AYC+ PE ELSNRVLRR+REVS+RFLRVTFMDEG QT+N  ALNYYVAPIVKEITS
Sbjct: 421  TPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITS 480

Query: 479  NSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDW 538
            NSF QKTRIYKRVKTIL++GF+FC RKY+FLAFSSNQLRDRSAWFFAED  I CD IR+W
Sbjct: 481  NSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNW 540

Query: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNTYVFSDGIGIITPDLA 598
            MGRF+ +NVAKCAARMGQCFSSTYA+VEVPA EVNSMLPD+ERN YVFSDGIGIIT DLA
Sbjct: 541  MGRFNQKNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVERNNYVFSDGIGIITTDLA 600

Query: 599  GEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAW 658
             EVAEKLKLD APSAYQIRYAGFKGVVA WPAKGDGI+LSLR SMNKFQS+HTTLEICAW
Sbjct: 601  VEVAEKLKLDKAPSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAW 660

Query: 659  TRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGN 718
            TRFQPGFLNRQIITLLSAL+V DE+FWKMQE MIS LNQMLV+ DVA+DVLTKSCAEHGN
Sbjct: 661  TRFQPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGN 720

Query: 719  AAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG 778
            AAAIMLSCGFSP+TEPHL+GML SIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG
Sbjct: 721  AAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG 780

Query: 779  QCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLH 838
            QCFVQVSTPSLENCFSKHGSRFSETK++ VVKG VVIAKNPCLHPGDVR+LEA+D PDLH
Sbjct: 781  QCFVQVSTPSLENCFSKHGSRFSETKTVHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLH 840

Query: 839  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQESKLQT 898
            HLYDC+VFPQKG+RPHT+EASGSDLDGDLYFVTWD NLIPPSKRSW PMEY AQES+LQT
Sbjct: 841  HLYDCVVFPQKGERPHTDEASGSDLDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQT 900

Query: 899  RKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAVDFPKT 958
            R+VT +DIIDFFVRNMVNE LG+ICNAHVVHADSSD+GALDE C+ LAE AA AVDFPKT
Sbjct: 901  RQVTVQDIIDFFVRNMVNEQLGSICNAHVVHADSSDYGALDENCVHLAELAATAVDFPKT 960

Query: 959  GKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELNYVTGAI 1018
            GKLV MPS LKPKLYPDFMGK+ H SYKSKKILGRLYRRIKDAYDKDIDAPE N V+  I
Sbjct: 961  GKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDI 1020

Query: 1019 PYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQ 1078
             YDT+LEVPGS++FIADAW+Q+CSYDGQLSGLLGQYKVK EEEVVTGQIWSMPKYNSRKQ
Sbjct: 1021 LYDTDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQ 1080

Query: 1079 GELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYHPTWVKK 1138
            GELKERLKHSYSALKKEFRQ FEKL SD  EL ++EKNLLYE+KASAWYQVTYHP WVKK
Sbjct: 1081 GELKERLKHSYSALKKEFRQIFEKLKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKK 1140

Query: 1139 SLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNRGFGRFDSTKPVGSLAKYLS 1198
            SL+LQ KS +N  ++SLG  VMLSFPWIAVDYLA TK R+R    FDSTK V SLAKYLS
Sbjct: 1141 SLDLQLKSSDNQSADSLGNMVMLSFPWIAVDYLACTKTRHRRVKDFDSTKQVDSLAKYLS 1200

Query: 1199 ERL 1201
            ERL
Sbjct: 1201 ERL 1203


>Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | HC |
            chr3:49541314-49536090 | 20130731
          Length = 1203

 Score = 2049 bits (5309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 976/1203 (81%), Positives = 1081/1203 (89%), Gaps = 2/1203 (0%)

Query: 1    MDLGGSEKESVVT--QVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEF 58
            MDL GS K+SV+T  QVSIGGFDS+VKA DL  +LE++IG V RCRLKTS TPPESYPEF
Sbjct: 1    MDLEGSVKDSVLTTTQVSIGGFDSDVKASDLVSYLESKIGYVDRCRLKTSCTPPESYPEF 60

Query: 59   NVADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPY 118
             + DT  ++ TDDYKKV PHAFVHF LP+SATEAL+A+G CDL+  GK LKVISGPQNP 
Sbjct: 61   TMTDTKQIEITDDYKKVAPHAFVHFTLPDSATEALNAAGRCDLILNGKVLKVISGPQNPN 120

Query: 119  FLNQRRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDT 178
            FLNQRRR E PFK+SDV+VEIGTLVSP +F VAWRG +KGVN LVDPFD++C++ F+RDT
Sbjct: 121  FLNQRRRTEAPFKMSDVIVEIGTLVSPADFTVAWRGCDKGVNFLVDPFDKICKICFNRDT 180

Query: 179  AFSIKQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIE 238
            AFS K   K+AVIKCDFKV F++RDI E++RYDDTS+ VVLL LASSPLVWYRTADDDI+
Sbjct: 181  AFSFKGIGKQAVIKCDFKVGFLIRDIEEIQRYDDTSHLVVLLRLASSPLVWYRTADDDID 240

Query: 239  ESVSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFP 298
            ESV+ DLLDDDDPWIRTTDFTPSGAIGRCN+YRISIPPRHGAKL KA+ YL  QRV   P
Sbjct: 241  ESVTIDLLDDDDPWIRTTDFTPSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIP 300

Query: 299  LKRPLRIQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVL 358
            LKRP +IQ+EP+FGVPMSD FFYI  Q+ I+FDIMFL+NA++H+GI N YSLS++FFE+L
Sbjct: 301  LKRPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNKFFELL 360

Query: 359  RNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVRRLVI 418
            +NQP++VNVAALKH+C+YK PVFDAAKRL+ VQ+WLLRNPK YQ SKQ+DD++EVRRLV+
Sbjct: 361  KNQPKDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVV 420

Query: 419  TPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 478
            TPT+AYC+ PE ELSNRVLRR+REVS+RFLRVTFMDEG QT+N  ALNYYVAPIVKEITS
Sbjct: 421  TPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITS 480

Query: 479  NSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDW 538
            NSF QKTRIYKRVKTIL++GF+FC RKY+FLAFSSNQLRDRSAWFFAED  I CD IR+W
Sbjct: 481  NSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNW 540

Query: 539  MGRFSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNTYVFSDGIGIITPDLA 598
            MGRF+ +NVAKCAARMGQCFSSTYA+VEVPA EVNSMLPD+ERN YVFSDGIGIIT DLA
Sbjct: 541  MGRFNQKNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVERNNYVFSDGIGIITTDLA 600

Query: 599  GEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAW 658
             EVAEKLKLD APSAYQIRYAGFKGVVA WPAKGDGI+LSLR SMNKFQS+HTTLEICAW
Sbjct: 601  VEVAEKLKLDKAPSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAW 660

Query: 659  TRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGN 718
            TRFQPGFLNRQIITLLSAL+V DE+FWKMQE MIS LNQMLV+ DVA+DVLTKSCAEHGN
Sbjct: 661  TRFQPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGN 720

Query: 719  AAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG 778
            AAAIMLSCGFSP+TEPHL+GML SIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG
Sbjct: 721  AAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG 780

Query: 779  QCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLH 838
            QCFVQVSTPSLENCFSKHGSRFSETK++ VVKG VVIAKNPCLHPGDVR+LEA+D PDLH
Sbjct: 781  QCFVQVSTPSLENCFSKHGSRFSETKTVHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLH 840

Query: 839  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQESKLQT 898
            HLYDC+VFPQKG+RPHT+EASGSDLDGDLYFVTWD NLIPPSKRSW PMEY AQES+LQT
Sbjct: 841  HLYDCVVFPQKGERPHTDEASGSDLDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQT 900

Query: 899  RKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAVDFPKT 958
            R+VT +DIIDFFVRNMVNE LG+ICNAHVVHADSSD+GALDE C+ LAE AA AVDFPKT
Sbjct: 901  RQVTVQDIIDFFVRNMVNEQLGSICNAHVVHADSSDYGALDENCVHLAELAATAVDFPKT 960

Query: 959  GKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELNYVTGAI 1018
            GKLV MPS LKPKLYPDFMGK+ H SYKSKKILGRLYRRIKDAYDKDIDAPE N V+  I
Sbjct: 961  GKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDI 1020

Query: 1019 PYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQ 1078
             YDT+LEVPGS++FIADAW+Q+CSYDGQLSGLLGQYKVK EEEVVTGQIWSMPKYNSRKQ
Sbjct: 1021 LYDTDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQ 1080

Query: 1079 GELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYHPTWVKK 1138
            GELKERLKHSYSALKKEFRQ FEKL SD  EL ++EKNLLYE+KASAWYQVTYHP WVKK
Sbjct: 1081 GELKERLKHSYSALKKEFRQIFEKLKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKK 1140

Query: 1139 SLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNRGFGRFDSTKPVGSLAKYLS 1198
            SL+LQ KS +N  ++SLG  VMLSFPWIAVDYLA TK R+R    FDSTK V SLAKYLS
Sbjct: 1141 SLDLQLKSSDNQSADSLGNMVMLSFPWIAVDYLACTKTRHRRVKDFDSTKQVDSLAKYLS 1200

Query: 1199 ERL 1201
            ERL
Sbjct: 1201 ERL 1203


>Medtr1g032630.3 | RNA-directed RNA polymerase | HC |
            chr1:11634851-11640459 | 20130731
          Length = 1114

 Score =  608 bits (1569), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 396/1068 (37%), Positives = 574/1068 (53%), Gaps = 100/1068 (9%)

Query: 132  LSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVI 191
            L DV +  G  +S E F   W+     V+  VD    M + RFS        +N+K    
Sbjct: 100  LDDVKLYFGCQISKERFSKLWK-----VDASVDFGIGMRKWRFSMH-----HENKK---- 145

Query: 192  KCDFKVEFMVRDIY--EVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLDD- 248
               FK+E    +I+  E+ +    + + +L+ L  +P V+    +     SV  D L + 
Sbjct: 146  ---FKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVF--ECNVPTSTSVYKDPLKNY 200

Query: 249  -----DDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQ-EFPLKRP 302
                 DD WIR  DFTP   IG+ +   + +         K    ++++ ++ ++ L+  
Sbjct: 201  YRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKENC-VHYEEIEGQYTLESG 259

Query: 303  LRIQDEPNFGVPMSDDFFYIHCQEGIT--FDIMFLVNAVIHKGILNPYSLSDRFFEVLRN 360
                  P+  VPM      +   +GI   FDI+F VN+++  G L+   L + F+ ++  
Sbjct: 260  SSFSCNPDV-VPM------VAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNDFYRLV-- 310

Query: 361  QPQEVNVAALKH----LCSYKRPVFDAAKRLKTVQEWLLR--NPKLYQSSKQADDIVEVR 414
             P  +NV  +KH    +   K   ++ A+ LK      LR  NP    +    + +V VR
Sbjct: 311  DPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLDNGLVYVR 370

Query: 415  RLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVK 474
            R+ ITP + Y   PE  +SNRVLR + +  + FLRV+F+DE +        N Y A +  
Sbjct: 371  RVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELD-------NMYSADLSS 423

Query: 475  EITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDK-IKCD 533
             I+ N    +T IY R+ +IL  G      K+ FLAFSS+QLR+ S W FA     +  D
Sbjct: 424  RISENG---RTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTAD 480

Query: 534  GIRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE----RNTYVFSD 588
             IR+WMG FS  +NVAK AAR+GQ F S+  T+ V   E+  ++PD +       YVFSD
Sbjct: 481  SIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIE-IIPDAKVKHGATEYVFSD 539

Query: 589  GIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQS 648
            GIG I+ +LA  VA+K   D  PSA+QIRY G+KGVVA  P     ++LSLR SM+K+ S
Sbjct: 540  GIGKISLELARRVAKKCGHDSVPSAFQIRYGGYKGVVAVDPTSS--VKLSLRKSMHKYDS 597

Query: 649  SHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDV 708
             +  L++ A ++FQP +LNRQ+ITLL  L+V D VF K Q+  +++LN +L ++  A +V
Sbjct: 598  DNIKLDVLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEV 657

Query: 709  LTKSCA-EHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMG 767
            L   C+ E  N    ML CG+ P  EP L  ML + RA++L  LR+K+RIF+  GR +MG
Sbjct: 658  LDLMCSGEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMG 717

Query: 768  VLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVR 827
            VLDE   LE G+ FVQ S+    N FS H          +VVKG V++AKNPCLHPGDVR
Sbjct: 718  VLDETRTLEYGEVFVQYSS----NRFSSHS---------RVVKGMVIVAKNPCLHPGDVR 764

Query: 828  ILEAIDSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPM 887
            +L+A+D P L H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIPP   +  PM
Sbjct: 765  VLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPP--LTIDPM 822

Query: 888  EYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAE 947
            EYD+ +  +    V   ++ ++F   ++N++LG I NAH V AD     A+ E CI LA+
Sbjct: 823  EYDSAQPIVLDHDVEIEEVEEYFTNYILNDSLGIIANAHTVFADKEPAKAMSEPCIELAK 882

Query: 948  KAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDID 1007
              + AVDFPKTG   ++P EL  K YPDFM K    +YKS  ++G+L+R I+    KD  
Sbjct: 883  LFSIAVDFPKTGIPAVIPRELFAKEYPDFMEKADKTTYKSDNVIGKLFREIQGISTKDGS 942

Query: 1008 APELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQI 1067
                        YD ++EV G  D++ DA+  K +YD +L  L+  Y +K E E+++G I
Sbjct: 943  ITSFTLEVAKKSYDPDMEVDGFMDYVDDAFYYKSNYDEKLGNLMDYYGIKTESEILSGNI 1002

Query: 1068 WSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWY 1127
              M K  ++++    + +  +  +L+KE R  F    +      ++        KASAWY
Sbjct: 1003 MKMAKSFTKRRD--ADAITMAVRSLRKEARSWFNDGSASVDSGSDDAY-----AKASAWY 1055

Query: 1128 QVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTK 1175
             VTYH ++              L +  +     LSFPW     L + K
Sbjct: 1056 YVTYHHSYY------------GLYNEGMQRDHFLSFPWCVYHLLVQIK 1091


>Medtr1g032630.1 | RNA-directed RNA polymerase | HC |
            chr1:11634851-11640459 | 20130731
          Length = 1114

 Score =  608 bits (1569), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 396/1068 (37%), Positives = 574/1068 (53%), Gaps = 100/1068 (9%)

Query: 132  LSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVI 191
            L DV +  G  +S E F   W+     V+  VD    M + RFS        +N+K    
Sbjct: 100  LDDVKLYFGCQISKERFSKLWK-----VDASVDFGIGMRKWRFSMH-----HENKK---- 145

Query: 192  KCDFKVEFMVRDIY--EVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLDD- 248
               FK+E    +I+  E+ +    + + +L+ L  +P V+    +     SV  D L + 
Sbjct: 146  ---FKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVF--ECNVPTSTSVYKDPLKNY 200

Query: 249  -----DDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQ-EFPLKRP 302
                 DD WIR  DFTP   IG+ +   + +         K    ++++ ++ ++ L+  
Sbjct: 201  YRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKENC-VHYEEIEGQYTLESG 259

Query: 303  LRIQDEPNFGVPMSDDFFYIHCQEGIT--FDIMFLVNAVIHKGILNPYSLSDRFFEVLRN 360
                  P+  VPM      +   +GI   FDI+F VN+++  G L+   L + F+ ++  
Sbjct: 260  SSFSCNPDV-VPM------VAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNDFYRLV-- 310

Query: 361  QPQEVNVAALKH----LCSYKRPVFDAAKRLKTVQEWLLR--NPKLYQSSKQADDIVEVR 414
             P  +NV  +KH    +   K   ++ A+ LK      LR  NP    +    + +V VR
Sbjct: 311  DPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLDNGLVYVR 370

Query: 415  RLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVK 474
            R+ ITP + Y   PE  +SNRVLR + +  + FLRV+F+DE +        N Y A +  
Sbjct: 371  RVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELD-------NMYSADLSS 423

Query: 475  EITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDK-IKCD 533
             I+ N    +T IY R+ +IL  G      K+ FLAFSS+QLR+ S W FA     +  D
Sbjct: 424  RISENG---RTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTAD 480

Query: 534  GIRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE----RNTYVFSD 588
             IR+WMG FS  +NVAK AAR+GQ F S+  T+ V   E+  ++PD +       YVFSD
Sbjct: 481  SIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIE-IIPDAKVKHGATEYVFSD 539

Query: 589  GIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQS 648
            GIG I+ +LA  VA+K   D  PSA+QIRY G+KGVVA  P     ++LSLR SM+K+ S
Sbjct: 540  GIGKISLELARRVAKKCGHDSVPSAFQIRYGGYKGVVAVDPTSS--VKLSLRKSMHKYDS 597

Query: 649  SHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDV 708
             +  L++ A ++FQP +LNRQ+ITLL  L+V D VF K Q+  +++LN +L ++  A +V
Sbjct: 598  DNIKLDVLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEV 657

Query: 709  LTKSCA-EHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMG 767
            L   C+ E  N    ML CG+ P  EP L  ML + RA++L  LR+K+RIF+  GR +MG
Sbjct: 658  LDLMCSGEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMG 717

Query: 768  VLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVR 827
            VLDE   LE G+ FVQ S+    N FS H          +VVKG V++AKNPCLHPGDVR
Sbjct: 718  VLDETRTLEYGEVFVQYSS----NRFSSHS---------RVVKGMVIVAKNPCLHPGDVR 764

Query: 828  ILEAIDSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPM 887
            +L+A+D P L H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIPP   +  PM
Sbjct: 765  VLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPP--LTIDPM 822

Query: 888  EYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAE 947
            EYD+ +  +    V   ++ ++F   ++N++LG I NAH V AD     A+ E CI LA+
Sbjct: 823  EYDSAQPIVLDHDVEIEEVEEYFTNYILNDSLGIIANAHTVFADKEPAKAMSEPCIELAK 882

Query: 948  KAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDID 1007
              + AVDFPKTG   ++P EL  K YPDFM K    +YKS  ++G+L+R I+    KD  
Sbjct: 883  LFSIAVDFPKTGIPAVIPRELFAKEYPDFMEKADKTTYKSDNVIGKLFREIQGISTKDGS 942

Query: 1008 APELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQI 1067
                        YD ++EV G  D++ DA+  K +YD +L  L+  Y +K E E+++G I
Sbjct: 943  ITSFTLEVAKKSYDPDMEVDGFMDYVDDAFYYKSNYDEKLGNLMDYYGIKTESEILSGNI 1002

Query: 1068 WSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWY 1127
              M K  ++++    + +  +  +L+KE R  F    +      ++        KASAWY
Sbjct: 1003 MKMAKSFTKRRD--ADAITMAVRSLRKEARSWFNDGSASVDSGSDDAY-----AKASAWY 1055

Query: 1128 QVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTK 1175
             VTYH ++              L +  +     LSFPW     L + K
Sbjct: 1056 YVTYHHSYY------------GLYNEGMQRDHFLSFPWCVYHLLVQIK 1091


>Medtr1g032720.1 | RNA-directed RNA polymerase | LC |
            chr1:11690971-11682431 | 20130731
          Length = 1726

 Score =  590 bits (1522), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 402/1137 (35%), Positives = 591/1137 (51%), Gaps = 106/1137 (9%)

Query: 79   AFVHFALPESATEALDASGSCDLMWE--GKPLKVISGPQNPYFLNQRRRKETPFKLSDVL 136
            A + F   + AT  +  S      W   G  LKV    ++   +N R R      L DV 
Sbjct: 660  AIIQFTTAKHATYMMTLSNISLPTWRYGGYDLKVREMERD---INPRPRAFLE-SLDDVK 715

Query: 137  VEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVIKCDFK 196
            +  G  +S E F   WR  +  V   +            R   FS++ ++KK      FK
Sbjct: 716  LHFGCQISKERFSALWREVDVSVEFGIG----------MRKWRFSMRHHDKK------FK 759

Query: 197  VEFMVRDI--YEVRRYDDTSYRVVLLHLASSPLVW--YRTADDDIEESVSFDLLDD--DD 250
            +E    +I   E+ R    + + +L+ L  +P V+  Y     ++ E  + +   D  D+
Sbjct: 760  LELSYENIGKIELHRPRGKTAKYLLIQLIGAPQVFELYIPNSKNVYEDPAKNYYKDSPDE 819

Query: 251  PWIRTTDFTPSGAIGRCNFYRISIPP-RHGAKLMKAMAYL-----NFQRVQEFPLKRPLR 304
             W R+ DFTP   IG  +   I +P  R      +  A+      N+   +  P  R L 
Sbjct: 820  QWTRSIDFTPFSCIGHSSALCIELPSNRDFPNFRENFAHYEEIEGNYTLERGLPFSRNLD 879

Query: 305  IQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQE 364
            +   P    P   +         I FDIMF VNA++  G L+   L + F+ ++      
Sbjct: 880  VV--PIVAPPRGIN---------IPFDIMFKVNALVQHGCLSGSELDNDFYRLVDPLKMT 928

Query: 365  VNVA--ALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQA--DDIVEVRRLVITP 420
             +    AL+ +   K   ++ A+ LK   +  +++  L  S   +  D +V VRR+ ITP
Sbjct: 929  SDCVEHALEKMYYSKDFCYEPARWLKDQYKMYIKSNYLPPSPTISLDDGLVYVRRVQITP 988

Query: 421  TRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNS 480
            ++ Y   PE  +SNRVLRR+ +  + FLRV+F+DEG+  +       Y A +   I+ + 
Sbjct: 989  SKVYFCGPEINVSNRVLRRFHKHIDNFLRVSFVDEGLDKL-------YSADLSSHISESG 1041

Query: 481  FPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFA-EDDKIKCDGIRDWM 539
               +T+IY R+ +IL  G     +K+ FLAFSS+QLR+ S W F+     +  D IR+WM
Sbjct: 1042 ---RTKIYYRILSILRNGIDIGGKKFEFLAFSSSQLRENSLWMFSPTTTGLTADSIREWM 1098

Query: 540  GRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE----RNTYVFSDGIGIIT 594
            G FS  +NVAK AAR+GQ F S+  T+ V   E+ + + D++       YVFSDGIG I+
Sbjct: 1099 GDFSRIKNVAKYAARLGQSFGSSTETLSVSRNEIET-ISDVKVKHGATKYVFSDGIGKIS 1157

Query: 595  PDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLE 654
             +LA  VA+K   D  PSA+QIRY GFKGVVA  P     ++LSLR SM+K+ S +  L+
Sbjct: 1158 IELARRVAKKCGHDSMPSAFQIRYCGFKGVVAVDPT--SSLKLSLRKSMHKYDSDNIKLD 1215

Query: 655  ICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVL-TKSC 713
            + A ++FQP +LNRQ+ITLLS L+V D VF K Q  ++++LN +L ++  A +VL     
Sbjct: 1216 VLACSKFQPCYLNRQLITLLSTLDVKDSVFEKKQRKVVNQLNTILTDSMKAHEVLDLMFS 1275

Query: 714  AEHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELG 773
             E  N    ML CG+ P  EP L  ML + RA++L  LR+++RIF+  GR +MGVLDE  
Sbjct: 1276 GEVANILKDMLICGYKPNIEPFLSMMLQTFRASKLLELRQRTRIFIPKGRTMMGVLDETR 1335

Query: 774  VLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAID 833
             LE G+ FVQ S   L        S  S     +VV      AKNPCLHPGDVR+L+A+D
Sbjct: 1336 TLEYGEVFVQYSNKRL--------SGLSHVVKGKVVV-----AKNPCLHPGDVRVLKAVD 1382

Query: 834  SPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQE 893
             P L H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIPP  R+  PMEYD+ +
Sbjct: 1383 VPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPP--RTIEPMEYDSAQ 1440

Query: 894  SKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAV 953
              +    V   ++ ++F   ++N++LG I NAH+V AD     A+ E CI LA+  + AV
Sbjct: 1441 PTVLDHDVEIEEVEEYFTNYILNDSLGIIANAHIVFADKEPGKAMAEPCIELAKLFSVAV 1500

Query: 954  DFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELNY 1013
            DFPKTG   ++P  L  K YPDFM K    +YKSK ++G+L+R I+     D        
Sbjct: 1501 DFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSKNVIGKLFREIQGISTNDGSITSFTL 1560

Query: 1014 VTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKY 1073
                  +D ++E  G  D+  DA+  K +YD +L  L+  Y +K E E+++G I  M K 
Sbjct: 1561 EVAKESHDPDMEFVGFMDYADDAFYHKTNYDYKLGNLMDYYGIKTESEIISGNIMKMSKS 1620

Query: 1074 NSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYHP 1133
             ++++    + +  +  +L+KE R  F + ++     G +  +     KASAWY VTYH 
Sbjct: 1621 FTKRRD--ADAIAMAIKSLRKEARSWFNEDNT-----GADSGSDCPYAKASAWYFVTYHH 1673

Query: 1134 TWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLA---RTKIRNRGFGRFDST 1187
            ++              L +  +     LSFPW     L    + K+R R   R + +
Sbjct: 1674 SYY------------GLYNEGMQRDHFLSFPWCVYHLLVQIKKEKVRMRMLSRMEQS 1718



 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 190/591 (32%), Positives = 287/591 (48%), Gaps = 68/591 (11%)

Query: 79  AFVHFALPESATEALDASGSCDLMWE--GKPLKVISGPQNPYFLNQRRRKETPFKLSDVL 136
           A + F   + AT  +  S      W   G  LKV    ++   +N R R      L DV 
Sbjct: 51  AIIQFTTAKHATYMMTLSNISLPTWRYGGYDLKVREMERD---INPRPRAFLE-SLDDVK 106

Query: 137 VEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVIKCDFK 196
           +  G  +S E F   WR  +  V   +            R   FS++ ++KK      FK
Sbjct: 107 LHFGCQISKERFSALWREVDVSVEFGIG----------MRKWRFSMRHHDKK------FK 150

Query: 197 VEFMVRDI--YEVRRYDDTSYRVVLLHLASSPLVW--YRTADDDIEESVSFDLLDD--DD 250
           +E    +I   E+ R    + + +L+ L  +P V+  Y     ++ E  + +   D  D+
Sbjct: 151 LELSYENIGKIELHRPRGKTAKYLLIQLIGAPQVFELYIPNSKNVYEDPAKNYYKDSPDE 210

Query: 251 PWIRTTDFTPSGAIGRCNFYRISIPP-RHGAKLMKAMAYL-----NFQRVQEFPLKRPLR 304
            W R+ DFTP   IG  +   I +P  R      +  A+      N+   +  P  R L 
Sbjct: 211 QWTRSIDFTPFSCIGHSSALCIELPSNRDFPNFRENFAHYEEIEGNYTLERGLPFSRNLD 270

Query: 305 IQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQE 364
           +   P    P   +         I FDIMF VNA++  G L+   L + F+ ++      
Sbjct: 271 VV--PIVAPPRGIN---------IPFDIMFKVNALVQHGCLSGSELDNDFYRLVDPLKMT 319

Query: 365 VNVA--ALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQA--DDIVEVRRLVITP 420
            +    AL+ +   K   ++ A+ LK   +  +++  L  S   +  D +V VRR+ ITP
Sbjct: 320 SDCVEHALEKMYYSKDFCYEPARWLKDQYKMYIKSNYLPPSPTISLDDGLVYVRRVQITP 379

Query: 421 TRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNS 480
           ++ Y   PE  +SNRVLRR+ +  + FLRV+F+DEG+  +       Y A +   I+ + 
Sbjct: 380 SKVYFCGPEINVSNRVLRRFHKHIDNFLRVSFVDEGLDKL-------YSADLSSHISESG 432

Query: 481 FPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFA-EDDKIKCDGIRDWM 539
              +T+IY R+ +IL  G     +K+ FLAFSS+QLR+ S W F+     +  D IR+WM
Sbjct: 433 ---RTKIYYRILSILRNGIDIGGKKFEFLAFSSSQLRENSLWMFSPTTTGLTADSIREWM 489

Query: 540 GRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE----RNTYVFSDGIGIIT 594
           G FS  +NVAK AAR+GQ F S+  T+ V   E+ + + D++       YVFSDGIG I+
Sbjct: 490 GDFSRIKNVAKYAARLGQSFGSSTETLSVSRNEIET-ISDVKVKHGATKYVFSDGIGKIS 548

Query: 595 PDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNK 645
            +LA  VA+K   D  PSA+QIRY GFKGVVA  P     ++LSLR SM+K
Sbjct: 549 IELARRVAKKCGHDSMPSAFQIRYGGFKGVVAVDPT--SSLKLSLRKSMHK 597


>Medtr1g032610.1 | RNA-directed RNA polymerase | HC |
            chr1:11626089-11631992 | 20130731
          Length = 1117

 Score =  587 bits (1514), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 396/1081 (36%), Positives = 574/1081 (53%), Gaps = 107/1081 (9%)

Query: 123  RRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSI 182
            RR +E    L+DV +     +S E   V WR     V++ VD    M + RF+      +
Sbjct: 93   RRPREILHSLNDVKLYFCCQISEERLSVLWRE----VDVRVDFGIGMRKWRFT------L 142

Query: 183  KQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTS--YRVVLLHLASSPLVW--YRTADDD-- 236
              + K       FK+E    +I+++  +   S   + +L+ L  +P V+  Y    DD  
Sbjct: 143  CHDNKT------FKLELSYENIWKIELHQPRSKTTKYLLIQLIGAPRVFELYSPTSDDAY 196

Query: 237  -IEESVSFDLLDD--DDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQR 293
             + E +S +   D  DD WIR  DFTP   IG+ +   + +P        +     NF +
Sbjct: 197  NVYEDLSKNYFSDPPDDQWIRAVDFTPCSCIGQSSALCLELPSNRDFPNFRE----NFAQ 252

Query: 294  VQEFPLKRPLRIQDEPNFG-----VPMSDDFFYIHCQEGIT--FDIMFLVNAVIHKGILN 346
             +E     P  ++    F      VPM      +   +GI   FDI+F VN+++  G L+
Sbjct: 253  YEE--SAGPYMLESGSPFSCNLDVVPM------VSPPQGIQIPFDILFKVNSLVQHGCLS 304

Query: 347  PYSLSDRFFEVLRNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQ 406
               L + F+ ++   P  VNV  +++  + ++  +      + V+ WL    K+Y SS  
Sbjct: 305  GSELDNAFYHLV--DPTRVNVELIEN--ALEKMYYSNDFCYEPVR-WLKDQYKMYHSSNN 359

Query: 407  A---------DDIVEVRRLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGM 457
                      + +V VRR  ITP + Y   PE  +SNRVLR+Y++  + FLRV+F+DE +
Sbjct: 360  LPRSPTISLDNGLVYVRRAQITPCKVYFCGPEINVSNRVLRKYKKHMDNFLRVSFVDEEL 419

Query: 458  QTINVNALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLR 517
              +  + L+  +          S   +T IY R+ +IL  G    D+K+ FLAFSS+QLR
Sbjct: 420  DKLYSSDLSSRI----------SVGGRTDIYYRILSILRNGIVIGDKKFEFLAFSSSQLR 469

Query: 518  DRSAWFFAEDDKIKCDG-IRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSM 575
            + S W FA        G IR+WMG FS  +NVAK AAR+GQ F S+  T  V +TE+  +
Sbjct: 470  ESSLWMFARTPTGDTAGSIREWMGDFSRIKNVAKYAARLGQSFGSSTETTTVSSTEIEII 529

Query: 576  LPDIERNTYVFSDGIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGI 635
            L    +  YVFSDGIG I+ +LA  VA+K   D  PSA+QIRY G+KGVVA  P     +
Sbjct: 530  LDVHNKTKYVFSDGIGKISLELARRVAQKCGYDSMPSAFQIRYGGYKGVVAVDPTSS--V 587

Query: 636  RLSLRTSMNKFQSSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKL 695
            +LSLR SM K+ S +T L++ A ++F+P +LNRQ+ITLLS L+V D VF K Q+  + +L
Sbjct: 588  KLSLRMSMLKYDSDNTDLDVLACSKFRPCYLNRQLITLLSTLDVEDSVFEKKQKEAVDQL 647

Query: 696  NQMLVNADVAFDVL-TKSCAEHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREK 754
            N +L ++  A +VL   S  E  N    ML CG+ P  EP L  ML + RA++L  LR+K
Sbjct: 648  NTILTDSTKAHEVLDLMSSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQK 707

Query: 755  SRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVV 814
            +RIF+  GR +MGVLDE   LE G+ FVQ S  + E+  S             VV G VV
Sbjct: 708  TRIFIPKGRAMMGVLDETRTLEYGEVFVQYSN-NREDSLS------------HVVNGKVV 754

Query: 815  IAKNPCLHPGDVRILEAIDSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDD 874
            +AKNPCL+PGDVR+L+A+D P L H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD 
Sbjct: 755  VAKNPCLYPGDVRVLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDS 814

Query: 875  NLIPPSKRSWIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSD 934
             LIPP  ++  PMEYD+ +  +    V   ++  +F   ++N+ LG I NAH V AD   
Sbjct: 815  ELIPP--KTIDPMEYDSAKPIVLDHDVEIEEVQKYFTDYILNDCLGIIANAHTVFADKEP 872

Query: 935  HGALDEKCIILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRL 994
              A+ + C+ LA+  + AVDFPKTG    +P  L P  YPDFM K     YKSK ++G+L
Sbjct: 873  GKAMADPCVELAKLFSTAVDFPKTGIPAEIPRGLFPTEYPDFMEKPDKPIYKSKNVIGKL 932

Query: 995  YRRIKDAYDKDIDAPELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQY 1054
            +R I+    KD              YD+++E  G  D++ DA+  K +YD +L  L+  Y
Sbjct: 933  FREIQGISTKDGSITSFTLEVAKESYDSDMEFEGFMDYVDDAFYHKTNYDYKLGNLMDYY 992

Query: 1055 KVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEE 1114
             +K E E+++G I  M K  ++K+    + +  +  +L+KE R  F    +     G + 
Sbjct: 993  GIKTEAEILSGNIMKMSKSFTKKRD--ADAITMAVRSLRKEARSWFTDSGA-----GVDS 1045

Query: 1115 KNLLYEKKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLART 1174
             +     KASAWY VTYH ++              L +  +     LSFPW     L + 
Sbjct: 1046 GSDDAYAKASAWYYVTYHHSYY------------GLYNEGMQRDHFLSFPWCVYHLLVQI 1093

Query: 1175 K 1175
            K
Sbjct: 1094 K 1094


>Medtr1g032610.2 | RNA-directed RNA polymerase | HC |
            chr1:11626089-11631992 | 20130731
          Length = 1054

 Score =  587 bits (1513), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 396/1081 (36%), Positives = 574/1081 (53%), Gaps = 107/1081 (9%)

Query: 123  RRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSI 182
            RR +E    L+DV +     +S E   V WR     V++ VD    M + RF+      +
Sbjct: 30   RRPREILHSLNDVKLYFCCQISEERLSVLWRE----VDVRVDFGIGMRKWRFT------L 79

Query: 183  KQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTS--YRVVLLHLASSPLVW--YRTADDD-- 236
              + K       FK+E    +I+++  +   S   + +L+ L  +P V+  Y    DD  
Sbjct: 80   CHDNKT------FKLELSYENIWKIELHQPRSKTTKYLLIQLIGAPRVFELYSPTSDDAY 133

Query: 237  -IEESVSFDLLDD--DDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQR 293
             + E +S +   D  DD WIR  DFTP   IG+ +   + +P        +     NF +
Sbjct: 134  NVYEDLSKNYFSDPPDDQWIRAVDFTPCSCIGQSSALCLELPSNRDFPNFRE----NFAQ 189

Query: 294  VQEFPLKRPLRIQDEPNFG-----VPMSDDFFYIHCQEGIT--FDIMFLVNAVIHKGILN 346
             +E     P  ++    F      VPM      +   +GI   FDI+F VN+++  G L+
Sbjct: 190  YEE--SAGPYMLESGSPFSCNLDVVPM------VSPPQGIQIPFDILFKVNSLVQHGCLS 241

Query: 347  PYSLSDRFFEVLRNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQ 406
               L + F+ ++   P  VNV  +++  + ++  +      + V+ WL    K+Y SS  
Sbjct: 242  GSELDNAFYHLV--DPTRVNVELIEN--ALEKMYYSNDFCYEPVR-WLKDQYKMYHSSNN 296

Query: 407  A---------DDIVEVRRLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGM 457
                      + +V VRR  ITP + Y   PE  +SNRVLR+Y++  + FLRV+F+DE +
Sbjct: 297  LPRSPTISLDNGLVYVRRAQITPCKVYFCGPEINVSNRVLRKYKKHMDNFLRVSFVDEEL 356

Query: 458  QTINVNALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLR 517
              +  + L+  +          S   +T IY R+ +IL  G    D+K+ FLAFSS+QLR
Sbjct: 357  DKLYSSDLSSRI----------SVGGRTDIYYRILSILRNGIVIGDKKFEFLAFSSSQLR 406

Query: 518  DRSAWFFAEDDKIKCDG-IRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSM 575
            + S W FA        G IR+WMG FS  +NVAK AAR+GQ F S+  T  V +TE+  +
Sbjct: 407  ESSLWMFARTPTGDTAGSIREWMGDFSRIKNVAKYAARLGQSFGSSTETTTVSSTEIEII 466

Query: 576  LPDIERNTYVFSDGIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGI 635
            L    +  YVFSDGIG I+ +LA  VA+K   D  PSA+QIRY G+KGVVA  P     +
Sbjct: 467  LDVHNKTKYVFSDGIGKISLELARRVAQKCGYDSMPSAFQIRYGGYKGVVAVDPTSS--V 524

Query: 636  RLSLRTSMNKFQSSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKL 695
            +LSLR SM K+ S +T L++ A ++F+P +LNRQ+ITLLS L+V D VF K Q+  + +L
Sbjct: 525  KLSLRMSMLKYDSDNTDLDVLACSKFRPCYLNRQLITLLSTLDVEDSVFEKKQKEAVDQL 584

Query: 696  NQMLVNADVAFDVL-TKSCAEHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREK 754
            N +L ++  A +VL   S  E  N    ML CG+ P  EP L  ML + RA++L  LR+K
Sbjct: 585  NTILTDSTKAHEVLDLMSSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQK 644

Query: 755  SRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVV 814
            +RIF+  GR +MGVLDE   LE G+ FVQ S  + E+  S             VV G VV
Sbjct: 645  TRIFIPKGRAMMGVLDETRTLEYGEVFVQYSN-NREDSLS------------HVVNGKVV 691

Query: 815  IAKNPCLHPGDVRILEAIDSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDD 874
            +AKNPCL+PGDVR+L+A+D P L H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD 
Sbjct: 692  VAKNPCLYPGDVRVLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDS 751

Query: 875  NLIPPSKRSWIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSD 934
             LIPP  ++  PMEYD+ +  +    V   ++  +F   ++N+ LG I NAH V AD   
Sbjct: 752  ELIPP--KTIDPMEYDSAKPIVLDHDVEIEEVQKYFTDYILNDCLGIIANAHTVFADKEP 809

Query: 935  HGALDEKCIILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRL 994
              A+ + C+ LA+  + AVDFPKTG    +P  L P  YPDFM K     YKSK ++G+L
Sbjct: 810  GKAMADPCVELAKLFSTAVDFPKTGIPAEIPRGLFPTEYPDFMEKPDKPIYKSKNVIGKL 869

Query: 995  YRRIKDAYDKDIDAPELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQY 1054
            +R I+    KD              YD+++E  G  D++ DA+  K +YD +L  L+  Y
Sbjct: 870  FREIQGISTKDGSITSFTLEVAKESYDSDMEFEGFMDYVDDAFYHKTNYDYKLGNLMDYY 929

Query: 1055 KVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEE 1114
             +K E E+++G I  M K  ++K+    + +  +  +L+KE R  F    +     G + 
Sbjct: 930  GIKTEAEILSGNIMKMSKSFTKKRD--ADAITMAVRSLRKEARSWFTDSGA-----GVDS 982

Query: 1115 KNLLYEKKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLART 1174
             +     KASAWY VTYH ++              L +  +     LSFPW     L + 
Sbjct: 983  GSDDAYAKASAWYYVTYHHSYY------------GLYNEGMQRDHFLSFPWCVYHLLVQI 1030

Query: 1175 K 1175
            K
Sbjct: 1031 K 1031


>Medtr1g032590.1 | RNA-directed RNA polymerase | HC |
            chr1:11614495-11618760 | 20130731
          Length = 1140

 Score =  569 bits (1466), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 375/1002 (37%), Positives = 533/1002 (53%), Gaps = 66/1002 (6%)

Query: 194  DFKVEFMVRDI--YEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLDDDDP 251
            D+K++     I   E+ R    + +++L  L S+P    R  + D+ E   F    D+  
Sbjct: 143  DYKMQINSESISRIEMHRSHCRTKKLLLFQLRSAP----RIYEKDVSEIKYFKEAYDNH- 197

Query: 252  WIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRV-QEFPLKRPLRIQDEPN 310
            W R+ DFTPS  IG+ +     +P            Y NF +V   F L++ L      N
Sbjct: 198  WFRSVDFTPSCCIGQSSSLCFELPQNTEVPNF-CQYYRNFYKVDNTFDLEKQLGFSSNLN 256

Query: 311  FGVPMSDDFFYIHCQEG--ITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQEVNV- 367
            F VPM      +   EG  + + I+F +N+++    L   ++    F ++   PQ +   
Sbjct: 257  F-VPM------VIPPEGFNLPYKILFKINSLVQHSCLPLQAIDTNLFHMV--DPQRIKFE 307

Query: 368  ---AALKHLCSYKRPVFDAAKRL-KTVQEWLLRNPKLYQSSKQADD-IVEVRRLVITPTR 422
               +AL  L   K   +D  + L K  Q +   +     SS   DD +V V R+ +TP++
Sbjct: 308  YVESALNKLYQMKECCYDPVQWLEKQYQRYSTNSSIPISSSISLDDGLVYVHRVKVTPSK 367

Query: 423  AYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFP 482
             Y   PE  LSNRVLR Y E ++ FLRV+F+DE M  +  + L    + I          
Sbjct: 368  IYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDENMDKLRSSDLLSGSSRI-------DVD 420

Query: 483  QKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWMGRF 542
             ++++++RV + L  G    D+K+ FLAFSS+QLRD SAW FA    +    IR WMG F
Sbjct: 421  GESKVHQRVLSTLTNGIEIGDKKFEFLAFSSSQLRDNSAWMFAPRTGLTTGDIRKWMGDF 480

Query: 543  SN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE----RNTYVFSDGIGIITPDL 597
               +NVAK AAR+GQ FSS+  TV V   E+  ++PDIE    +  Y FSDGIG I+ +L
Sbjct: 481  HEIKNVAKYAARLGQSFSSSRETVSVGRHEI-EIIPDIELKRGKIKYCFSDGIGKISYEL 539

Query: 598  AGEVAEKL--KLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEI 655
            A EVAEK   K  I PSA+QIRY G+KGVVA  P      +LSLR SM KF+S +T L++
Sbjct: 540  AQEVAEKCGCKDHIIPSAFQIRYGGYKGVVAVDP--NSSTKLSLRNSMCKFKSENTKLDV 597

Query: 656  CAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAE 715
             +W++ +P FLNRQ+I LLS L V D +F + Q  +++KL  +      A D++++    
Sbjct: 598  LSWSKNKPCFLNRQVIVLLSTLGVKDRIFKRKQREIVNKLKMISRKPFNALDMMSQGTIT 657

Query: 716  HGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVL 775
              +    M+ CGF+P  EP L  ML +I A +L  L+ K+RIFV  GR ++G LDE   L
Sbjct: 658  --DMLREMIICGFNPTNEPFLSMMLRTICATKLQELQLKTRIFVRKGRSMLGCLDETRTL 715

Query: 776  EQGQCFVQVSTPSLENCFSKHGSR-FSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDS 834
            + G+ FVQ+S P  +N  S   S+     K   +VKG VV+AKNPCLHPGDVRIL AID 
Sbjct: 716  KYGEVFVQISLPR-KNVMSSISSKDIGAKKGKYIVKGKVVVAKNPCLHPGDVRILRAIDV 774

Query: 835  PDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQES 894
            P LHH+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD  LIPP + +  PM++   + 
Sbjct: 775  PSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPALIPPHQEN--PMDHSPPKV 832

Query: 895  KLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAVD 954
                  VT +D+ + F   +V + LG I  AH V AD     A+   CI LA+  + AVD
Sbjct: 833  MHVDHDVTLQDVEEHFTHYIVKDTLGVIATAHTVFADKEPEKAMSHSCIELAKLHSIAVD 892

Query: 955  FPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELNYV 1014
            F K+G    +P  L  K YPDFM K    +Y+S  I+G+LYR +K+   +          
Sbjct: 893  FAKSGVPAEVPQHLHVKQYPDFMEKQDKPTYQSNSIIGKLYREVKNVAQQKSLKKSFTKK 952

Query: 1015 TGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPK-Y 1073
                 YD ++++ G   +   A + K  YD +L  L+  Y ++ E E+++G I  M K +
Sbjct: 953  AANKFYDHDMKIDGFEKYTKIACEYKQMYDTKLMNLMDYYGIETEAEIISGNILKMSKSF 1012

Query: 1074 NSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYHP 1133
            N RK    KE + H+  +L+ E R  F ++       G    +  Y   ASAWY VTYHP
Sbjct: 1013 NDRKD---KEGINHAVMSLRNEARSWFSEMIRKSNSQGGGGDDDSYA-IASAWYHVTYHP 1068

Query: 1134 TWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTK 1175
            ++                +  L +   LSFPW   D L + K
Sbjct: 1069 SY------------WGCYNEGLNKDHFLSFPWCVHDTLIQIK 1098


>Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | HC |
            chr4:44020611-44014643 | 20130731
          Length = 1277

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 360/1019 (35%), Positives = 541/1019 (53%), Gaps = 85/1019 (8%)

Query: 195  FKVEFMVRDIYEVRRY---DDTSYRVVLLHLASSPLVWYRTADDDI-----EESVSFDLL 246
            FK+E    +I E   Y   + +    +LL L   P ++ + A  ++     ++   F   
Sbjct: 152  FKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKE 211

Query: 247  DDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQR--VQEFPLKRP-- 302
            + +  W+RTTDF+   +IG            H       +   +F     + FPL R   
Sbjct: 212  NFEFMWVRTTDFSTLKSIG------------HSTSFFWEIVEESFDSDVFRSFPLYRENL 259

Query: 303  --LRIQDEPNFGVPMSDDFFYIHCQ--EGITFDIMFLVNAVIHKGILNPYSLSDRFFEVL 358
              L ++D   F  P ++    + C+    + ++ +F +N+++H   ++  S++D   ++L
Sbjct: 260  KDLSLEDGEKFCSP-TETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLL 318

Query: 359  RNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQA----DDIVEVR 414
             +   E      + L       ++  K ++T    L    K    S+Q     ++I+   
Sbjct: 319  ASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMSCH 378

Query: 415  RLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVK 474
            R +ITP++ YC+ PE E SN V++ +   ++ F+R+TF++E    +  NA++     I  
Sbjct: 379  RALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAIS-----ITL 433

Query: 475  EITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDG 534
            +    S P +T IYKRV  IL +G     +++ FLAFS++QLR  S W FA +DK+K   
Sbjct: 434  KKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAAD 493

Query: 535  IRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNT----YVFSDG 589
            IR+WMG F+N R+V+KCAARMGQ FSS+  T E+   +V+ ++PDIE  +    Y FSDG
Sbjct: 494  IREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVD-LIPDIEITSDGIDYCFSDG 552

Query: 590  IGIITPDLAGEVAEKLKLD--IAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQ 647
            IG I+   A ++AEKLKLD    PSA+QIRY G+KGV+A    +    +LSLR SM KF+
Sbjct: 553  IGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAV--DRHSFKKLSLRKSMLKFE 610

Query: 648  SSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFD 707
            S +  L +  W+   P FLNR+II+LLS L + DE    +QE  +  L +ML + + A D
Sbjct: 611  SKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALD 670

Query: 708  VLTKSCAEHGNAAAI-MLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLM 766
            VL        N+  + ML   + P +EP+L  ML +    QL  L+ + RIFV  GR L+
Sbjct: 671  VLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLI 730

Query: 767  GVLDELGVLEQGQCFVQVSTPSLENCFSKHGSR-FSETKSLQVVKGYVVIAKNPCLHPGD 825
            G LDE G+L  GQ FV+++    +  F     R      S +++ G VV+ KNPCLHPGD
Sbjct: 731  GCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGD 790

Query: 826  VRILEAIDSPDLHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRS 883
            +R+L+A+ S +L    L DCLVFPQKG RPH NE SG DLDGDL+F++WD +LIP    +
Sbjct: 791  IRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTEN 850

Query: 884  WIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCI 943
              PM+Y  +  ++   KVT  +I  FFV  M+N+ LGAI  AH+VHAD     A   KC+
Sbjct: 851  --PMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCL 908

Query: 944  ILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYD 1003
             LAE  + AVDF KTG    MP  LKP+ +PDFM + +   Y SK +LG+LYR   D+  
Sbjct: 909  ELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNL 968

Query: 1004 KDIDAPELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVV 1063
            +      ++       YD +LEV G   F+  A   +  Y  ++  L+  Y    E+E++
Sbjct: 969  QVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEML 1028

Query: 1064 TGQIWSMPKY---NSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYE 1120
            TG + +   Y   ++R+ G++K+R+  S   L+ E ++ FE  D    E         Y+
Sbjct: 1029 TGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFES-DCQPHE---------YQ 1078

Query: 1121 KKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNR 1179
              ASAWY VTYHP +  +S                  +  LSFPWI  D L   K  N+
Sbjct: 1079 LMASAWYHVTYHPKYYIES------------------STFLSFPWIVGDILLHIKSANK 1119



 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 63/100 (63%)

Query: 902  TSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAVDFPKTGKL 961
            ++  I  FFV  M+ + LGAI  AH+VHAD   + A   KC+ LAE  + AVDF KTG L
Sbjct: 1116 SANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKTGAL 1175

Query: 962  VIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDA 1001
              MP  LKPK +PDFM + +   Y SK +LG+LYR + ++
Sbjct: 1176 AEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRALVES 1215


>Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | HC |
            chr4:44020672-44015304 | 20130731
          Length = 1123

 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 360/1018 (35%), Positives = 540/1018 (53%), Gaps = 85/1018 (8%)

Query: 195  FKVEFMVRDIYEVRRY---DDTSYRVVLLHLASSPLVWYRTADDDI-----EESVSFDLL 246
            FK+E    +I E   Y   + +    +LL L   P ++ + A  ++     ++   F   
Sbjct: 152  FKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKE 211

Query: 247  DDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQR--VQEFPLKRP-- 302
            + +  W+RTTDF+   +IG            H       +   +F     + FPL R   
Sbjct: 212  NFEFMWVRTTDFSTLKSIG------------HSTSFFWEIVEESFDSDVFRSFPLYRENL 259

Query: 303  --LRIQDEPNFGVPMSDDFFYIHCQ--EGITFDIMFLVNAVIHKGILNPYSLSDRFFEVL 358
              L ++D   F  P ++    + C+    + ++ +F +N+++H   ++  S++D   ++L
Sbjct: 260  KDLSLEDGEKFCSP-TETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLL 318

Query: 359  RNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQA----DDIVEVR 414
             +   E      + L       ++  K ++T    L    K    S+Q     ++I+   
Sbjct: 319  ASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMSCH 378

Query: 415  RLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVK 474
            R +ITP++ YC+ PE E SN V++ +   ++ F+R+TF++E    +  NA++     I  
Sbjct: 379  RALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAIS-----ITL 433

Query: 475  EITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDG 534
            +    S P +T IYKRV  IL +G     +++ FLAFS++QLR  S W FA +DK+K   
Sbjct: 434  KKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAAD 493

Query: 535  IRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNT----YVFSDG 589
            IR+WMG F+N R+V+KCAARMGQ FSS+  T E+   +V+ ++PDIE  +    Y FSDG
Sbjct: 494  IREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVD-LIPDIEITSDGIDYCFSDG 552

Query: 590  IGIITPDLAGEVAEKLKLD--IAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQ 647
            IG I+   A ++AEKLKLD    PSA+QIRY G+KGV+A    +    +LSLR SM KF+
Sbjct: 553  IGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAV--DRHSFKKLSLRKSMLKFE 610

Query: 648  SSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFD 707
            S +  L +  W+   P FLNR+II+LLS L + DE    +QE  +  L +ML + + A D
Sbjct: 611  SKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALD 670

Query: 708  VLTKSCAEHGNAAAI-MLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLM 766
            VL        N+  + ML   + P +EP+L  ML +    QL  L+ + RIFV  GR L+
Sbjct: 671  VLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLI 730

Query: 767  GVLDELGVLEQGQCFVQVSTPSLENCFSKHGSR-FSETKSLQVVKGYVVIAKNPCLHPGD 825
            G LDE G+L  GQ FV+++    +  F     R      S +++ G VV+ KNPCLHPGD
Sbjct: 731  GCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGD 790

Query: 826  VRILEAIDSPDLHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRS 883
            +R+L+A+ S +L    L DCLVFPQKG RPH NE SG DLDGDL+F++WD +LIP    +
Sbjct: 791  IRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTEN 850

Query: 884  WIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCI 943
              PM+Y  +  ++   KVT  +I  FFV  M+N+ LGAI  AH+VHAD     A   KC+
Sbjct: 851  --PMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCL 908

Query: 944  ILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYD 1003
             LAE  + AVDF KTG    MP  LKP+ +PDFM + +   Y SK +LG+LYR   D+  
Sbjct: 909  ELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNL 968

Query: 1004 KDIDAPELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVV 1063
            +      ++       YD +LEV G   F+  A   +  Y  ++  L+  Y    E+E++
Sbjct: 969  QVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEML 1028

Query: 1064 TGQIWSMPKY---NSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYE 1120
            TG + +   Y   ++R+ G++K+R+  S   L+ E ++ FE  D    E         Y+
Sbjct: 1029 TGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFES-DCQPHE---------YQ 1078

Query: 1121 KKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRN 1178
              ASAWY VTYHP +  +S                  +  LSFPWI  D L   K  N
Sbjct: 1079 LMASAWYHVTYHPKYYIES------------------STFLSFPWIVGDILLHIKSAN 1118


>Medtr1g032630.2 | RNA-directed RNA polymerase | HC |
           chr1:11634851-11638361 | 20130731
          Length = 789

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 281/745 (37%), Positives = 406/745 (54%), Gaps = 79/745 (10%)

Query: 132 LSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVI 191
           L DV +  G  +S E F   W+     V+  VD    M + RFS        +N+K    
Sbjct: 100 LDDVKLYFGCQISKERFSKLWK-----VDASVDFGIGMRKWRFSMH-----HENKK---- 145

Query: 192 KCDFKVEFMVRDIY--EVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLDD- 248
              FK+E    +I+  E+ +    + + +L+ L  +P V+    +     SV  D L + 
Sbjct: 146 ---FKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVF--ECNVPTSTSVYKDPLKNY 200

Query: 249 -----DDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQ-EFPLKRP 302
                DD WIR  DFTP   IG+ +   + +         K    ++++ ++ ++ L+  
Sbjct: 201 YRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKENC-VHYEEIEGQYTLESG 259

Query: 303 LRIQDEPNFGVPMSDDFFYIHCQEGIT--FDIMFLVNAVIHKGILNPYSLSDRFFEVLRN 360
                 P+  VPM      +   +GI   FDI+F VN+++  G L+   L + F+ ++  
Sbjct: 260 SSFSCNPDV-VPM------VAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNDFYRLV-- 310

Query: 361 QPQEVNVAALKH----LCSYKRPVFDAAKRLKTVQEWLLR--NPKLYQSSKQADDIVEVR 414
            P  +NV  +KH    +   K   ++ A+ LK      LR  NP    +    + +V VR
Sbjct: 311 DPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLDNGLVYVR 370

Query: 415 RLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVK 474
           R+ ITP + Y   PE  +SNRVLR + +  + FLRV+F+DE +        N Y A +  
Sbjct: 371 RVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELD-------NMYSADLSS 423

Query: 475 EITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDK-IKCD 533
            I+ N    +T IY R+ +IL  G      K+ FLAFSS+QLR+ S W FA     +  D
Sbjct: 424 RISENG---RTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTAD 480

Query: 534 GIRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE----RNTYVFSD 588
            IR+WMG FS  +NVAK AAR+GQ F S+  T+ V   E+  ++PD +       YVFSD
Sbjct: 481 SIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIE-IIPDAKVKHGATEYVFSD 539

Query: 589 GIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQS 648
           GIG I+ +LA  VA+K   D  PSA+QIRY G+KGVVA  P     ++LSLR SM+K+ S
Sbjct: 540 GIGKISLELARRVAKKCGHDSVPSAFQIRYGGYKGVVAVDPT--SSVKLSLRKSMHKYDS 597

Query: 649 SHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDV 708
            +  L++ A ++FQP +LNRQ+ITLL  L+V D VF K Q+  +++LN +L ++  A +V
Sbjct: 598 DNIKLDVLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEV 657

Query: 709 LTKSCA-EHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMG 767
           L   C+ E  N    ML CG+ P  EP L  ML + RA++L  LR+K+RIF+  GR +MG
Sbjct: 658 LDLMCSGEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMG 717

Query: 768 VLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVR 827
           VLDE   LE G+ FVQ S+    N FS H          +VVKG V++AKNPCLHPGDVR
Sbjct: 718 VLDETRTLEYGEVFVQYSS----NRFSSHS---------RVVKGMVIVAKNPCLHPGDVR 764

Query: 828 ILEAIDSPDLHHLYDCLVFPQKGDR 852
           +L+A+D P L H+ DC+VFPQKG R
Sbjct: 765 VLKAVDVPALRHMVDCVVFPQKGHR 789


>Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | HC |
            chr1:11677169-11674944 | 20130731
          Length = 554

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/566 (41%), Positives = 326/566 (57%), Gaps = 37/566 (6%)

Query: 611  PSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAWTRFQPGFLNRQI 670
            PSA+QIRY GFKGVVA  P     ++LSLR SM K+ S +  L++ A ++FQP +LNRQ+
Sbjct: 2    PSAFQIRYRGFKGVVAVDPTSS--VKLSLRMSMRKYDSVNADLDVLACSKFQPCYLNRQL 59

Query: 671  ITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVL-TKSCAEHGNAAAIMLSCGFS 729
            ITLLS L+V D VF K Q  ++++LN +L ++  A +VL      E  N    ML CG+ 
Sbjct: 60   ITLLSTLDVKDSVFEKKQRKVVNQLNTILTDSMKAHEVLDLMFSGEVANILKDMLICGYK 119

Query: 730  PQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSL 789
            P  EP L  ML + RA++L  LR+++RIF+  GR +MGVLDE   LE G+ FVQ S    
Sbjct: 120  PNIEPFLSMMLQTFRASKLLELRQRTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSHKR- 178

Query: 790  ENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLHHLYDCLVFPQK 849
             +C S             VVKG VV+AKNPCLHPGDVR+L+A+D P L H+ DC+VFPQK
Sbjct: 179  HSCLS------------HVVKGEVVVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQK 226

Query: 850  GDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQESKLQTRKVTSRDIIDF 909
            G RPH NE SGSDLDGD+YFV WD  LIPP  R+  PMEY++ +S L    V   ++ ++
Sbjct: 227  GHRPHPNECSGSDLDGDIYFVCWDPELIPP--RTIEPMEYNSAQSTLLNHDVEIEEVEEY 284

Query: 910  FVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAVDFPKTGKLVIMPSELK 969
            F   M+N++LG I NAH V AD     A+ E CI LA+  + AVDFPKTG   ++P  L 
Sbjct: 285  FTNYMLNDSLGIISNAHTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPPHLF 344

Query: 970  PKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELNYVTGAIPYDTELEVPGS 1029
             K YPDFM K    +YKSK ++G+L+R I+    +               YD+++E  G 
Sbjct: 345  AKEYPDFMEKPDKTTYKSKNVIGKLFREIQGISTEGGSLTSFTLEVAKESYDSDMEFEGF 404

Query: 1030 ADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSY 1089
             D++ DA+  K +YD +L  L+  Y +K E E+++G I  M K  ++++    + +  + 
Sbjct: 405  MDYVDDAFYHKTNYDYKLGNLMDYYGIKTESEILSGNIMKMSKSFTKRRD--ADAITMAV 462

Query: 1090 SALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYHPTWVKKSLELQDKSPEN 1149
             +L+KE R  F    +D  + G ++       KASAWY V+               S   
Sbjct: 463  RSLRKEARSWFNDGAADV-DAGSDDAY----AKASAWYYVS------------YHHSYYG 505

Query: 1150 LESNSLGETVMLSFPWIAVDYLARTK 1175
            L +  +     LSFPW     L + K
Sbjct: 506  LYNEGMKRDHFLSFPWCVYHLLVQIK 531


>Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | HC
           | chr6:33756998-33772645 | 20130731
          Length = 974

 Score = 64.3 bits (155), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 156/367 (42%), Gaps = 61/367 (16%)

Query: 664 GFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAAAIM 723
            +L++ +I LLS   V +E F  + +  +     +  N   A              AA M
Sbjct: 491 AYLSKYLIALLSFGGVPNEFFMDVLKRNLEDAEHIYTNKRAALRASVNHAEMDEYNAAGM 550

Query: 724 LSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQ 783
           L CG  P  EP ++  L+ +   +   LR   ++++    ++MG +D      +  C   
Sbjct: 551 LLCGI-PLDEPFMRYHLSILAKTEKNRLR-AGKLYLEDCFYVMGTVDP----TESHCL-- 602

Query: 784 VSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLH----H 839
              P+      ++G           + G V++ +NP LH GD+  ++A    +L     H
Sbjct: 603 --KPNQVCIIHENGQ----------ITGDVLVYRNPGLHFGDIHKMQATYVEELESYVGH 650

Query: 840 LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLI------------PP--SKRSWI 885
               + FP  G R   +E +G D DGD+Y+++ +  L+            PP  S RS+ 
Sbjct: 651 GKYAIFFPCVGPRSIADEIAGGDFDGDMYWISKNPQLLQYFKSSKPWIESPPCNSARSFC 710

Query: 886 ---PMEYDAQESK-------LQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHAD--SS 933
              P E  A+E +       L+TR   S  I       M  +   A+ +  ++  +  S 
Sbjct: 711 VKKPSELSAEELEEALFRLYLETRFQPSSAI------GMAADGWMALMDRLLILPNDRSI 764

Query: 934 DHGALDEKCIILAEKAAAAVDFPKT--GKLVIMPSELKPKLYPDFMGKDQHMSYKSKKIL 991
           +   + E    L +    A+D PK   GK+ I PS L  +++P +M  ++++S+ S  IL
Sbjct: 765 EKEQVKENIYKLIDLYYEALDAPKKGGGKMKI-PSNLNVEMFPHYM--ERNISFTSTSIL 821

Query: 992 GRLYRRI 998
           G +Y  +
Sbjct: 822 GSIYDEV 828