Miyakogusa Predicted Gene

Lj1g3v1900600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1900600.1 Non Characterized Hit- tr|I1M0P2|I1M0P2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37461 PE,81.3,0,Ribosome
recycling factor, RRF,Ribosome recycling factor domain; no
description,NULL; RRF,Ribosome r,CUFF.28102.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g040070.1 | ribosome recycling factor | HC | chr8:14906449...   407   e-114
Medtr1g072170.1 | ribosome recycling factor | HC | chr1:32030809...   122   3e-28

>Medtr8g040070.1 | ribosome recycling factor | HC |
           chr8:14906449-14903050 | 20130731
          Length = 263

 Score =  407 bits (1047), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/262 (78%), Positives = 222/262 (84%), Gaps = 1/262 (0%)

Query: 1   MSGYI-RRAISCQNLLQLRNSAFHVCDVPGAIQIRALESNRVSTLPAAANFIVESRRAFA 59
           M+GYI RRA  C+NL +L   A HVC+          ++ R    P   NFIVESRRAFA
Sbjct: 2   MAGYIVRRAFGCRNLFRLPTCALHVCENSPVKFCMTDDTTRAVISPPMPNFIVESRRAFA 61

Query: 60  KGRKSKDDAGMSTIEVPLVLGPTIKANAVSQMEAAISALSTELSKLRTGRASPGMLDHII 119
           KGRKSKD+ G+ST EVP  +GP IKA+A SQMEAA++ALS ELSKLRTGRAS GMLDHII
Sbjct: 62  KGRKSKDEGGVSTAEVPPNVGPNIKASASSQMEAAMTALSVELSKLRTGRASAGMLDHII 121

Query: 120 VETGGVKIPLVRIALVSVIDPKTLSVNPYDPQTLKQLENAIVSSPLGLNPKADGERLIAA 179
           VETGGVK+PL RIALVSV+DPKTLSVNPYDP+TLKQLENAIVSSPLGLNP+ DGERLIA 
Sbjct: 122 VETGGVKMPLSRIALVSVLDPKTLSVNPYDPETLKQLENAIVSSPLGLNPRTDGERLIAV 181

Query: 180 IPPLTKEHMQAMNKLVTKSCEDARQSIRRARQKAMDAIKKLNSSLPKDDIKRLEKEVDDL 239
           IPPLTKEHMQAMNKLVTKSCED RQSIRRARQKAMDAIKKLNS LPKDD+KRLEKEVDDL
Sbjct: 182 IPPLTKEHMQAMNKLVTKSCEDTRQSIRRARQKAMDAIKKLNSILPKDDLKRLEKEVDDL 241

Query: 240 TKKFIKTAEDTCKAKEKEISQG 261
           TKKFIKTAED CKAKEKEISQG
Sbjct: 242 TKKFIKTAEDVCKAKEKEISQG 263


>Medtr1g072170.1 | ribosome recycling factor | HC |
           chr1:32030809-32023959 | 20130731
          Length = 262

 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 2/179 (1%)

Query: 82  TIKANAVSQMEAAISALSTELSKLRTGRASPGMLDHIIVETGGVKIPLVRIALVSVIDPK 141
           +I+ +  S+ME  +  + T  S +RTGRA+P MLD I VE  G  + L  IA +S  D  
Sbjct: 81  SIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDAS 140

Query: 142 TLSVNPYDPQTLKQLENAIVSSPLGLNPKADGERLIAAIPPLTKEHMQAMNKLVTKSCED 201
           +L V+PYD  +LK +E AIV+S +G+ P  DGE +  +IP LT +  + + K+V+K  E+
Sbjct: 141 SLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEE 200

Query: 202 ARQSIRRARQKAMDAIKKL--NSSLPKDDIKRLEKEVDDLTKKFIKTAEDTCKAKEKEI 258
            + ++R  R+ A+ A +KL  +  L +D++K L  ++  LT  +IK  +   K KEKE+
Sbjct: 201 GKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKEL 259