Miyakogusa Predicted Gene

Lj1g3v1852290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1852290.2 Non Characterized Hit- tr|E1ZCG5|E1ZCG5_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,39.23,0.00000000001,NEUROCHONDRIN-RELATED,NULL;
NEUROCHONDRIN,Neurochondrin; Neurochondrin,NULL; seg,NULL,CUFF.28084.2
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106410.2 | neurochondrin protein | HC | chr3:49176740-491...   231   3e-61
Medtr3g106410.1 | neurochondrin protein | HC | chr3:49176740-491...   229   6e-61

>Medtr3g106410.2 | neurochondrin protein | HC |
           chr3:49176740-49182193 | 20130731
          Length = 435

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 131/163 (80%)

Query: 1   MEPNQEQSPNLEECLKLLKGEQDEQRLAGLLLVTKFCKADDRSSLSRVYDAVGPVFLDRL 60
           ME  QE S NLE+CLKLLKGE+DEQRLAGLLLVTKFCKADD SSL +VY+AVG  FL+RL
Sbjct: 1   MEAQQEPSLNLEDCLKLLKGERDEQRLAGLLLVTKFCKADDHSSLRKVYNAVGFRFLERL 60

Query: 61  LXXXXXXXXXXXXXXNNRDAYLSVAVTVLSTFCRVPEIASSEDMVVKIPLILEVMSTQSG 120
           L              NNRDAYLS++VTVL+  CRVPEIASSEDM   IPLILEVMST+SG
Sbjct: 61  LRTGMGKGAISSDGDNNRDAYLSLSVTVLAALCRVPEIASSEDMTSMIPLILEVMSTRSG 120

Query: 121 SSALEECYEFLYLVSTASENGLMRFYESKGIKILASQMSSLQD 163
           SS LEEC EFLYLVSTASENG+ RFYES+GIKI ASQ+ S++D
Sbjct: 121 SSVLEECCEFLYLVSTASENGITRFYESRGIKIAASQLPSMED 163


>Medtr3g106410.1 | neurochondrin protein | HC |
           chr3:49176740-49185818 | 20130731
          Length = 620

 Score =  229 bits (585), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 131/163 (80%)

Query: 1   MEPNQEQSPNLEECLKLLKGEQDEQRLAGLLLVTKFCKADDRSSLSRVYDAVGPVFLDRL 60
           ME  QE S NLE+CLKLLKGE+DEQRLAGLLLVTKFCKADD SSL +VY+AVG  FL+RL
Sbjct: 1   MEAQQEPSLNLEDCLKLLKGERDEQRLAGLLLVTKFCKADDHSSLRKVYNAVGFRFLERL 60

Query: 61  LXXXXXXXXXXXXXXNNRDAYLSVAVTVLSTFCRVPEIASSEDMVVKIPLILEVMSTQSG 120
           L              NNRDAYLS++VTVL+  CRVPEIASSEDM   IPLILEVMST+SG
Sbjct: 61  LRTGMGKGAISSDGDNNRDAYLSLSVTVLAALCRVPEIASSEDMTSMIPLILEVMSTRSG 120

Query: 121 SSALEECYEFLYLVSTASENGLMRFYESKGIKILASQMSSLQD 163
           SS LEEC EFLYLVSTASENG+ RFYES+GIKI ASQ+ S++D
Sbjct: 121 SSVLEECCEFLYLVSTASENGITRFYESRGIKIAASQLPSMED 163