Miyakogusa Predicted Gene

Lj1g3v1852280.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1852280.2 tr|A9TFH4|A9TFH4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_92084
,26.62,0.0000000000003,seg,NULL; Neurochondrin,NULL; coiled-coil,NULL;
NEUROCHONDRIN-RELATED,NULL; NEUROCHONDRIN,Neurochond,CUFF.28079.2
         (281 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106410.1 | neurochondrin protein | HC | chr3:49176740-491...   429   e-120
Medtr3g106410.2 | neurochondrin protein | HC | chr3:49176740-491...   224   7e-59

>Medtr3g106410.1 | neurochondrin protein | HC |
           chr3:49176740-49185818 | 20130731
          Length = 620

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/281 (75%), Positives = 238/281 (84%), Gaps = 7/281 (2%)

Query: 1   MYGEDWLIRQVSTNDTQDPTPADMCPLLVLEQSRVEIAVLLNELAYLKYEAPQDTSSTAE 60
           ++GEDWLI       +QDPTP +MC LLVLEQSRVEIAVLLNELAYLKY APQDT ++ E
Sbjct: 279 IFGEDWLI-------SQDPTPDNMCLLLVLEQSRVEIAVLLNELAYLKYGAPQDTPASVE 331

Query: 61  AYSLKRQNVVVAYSLVEKIIKLISNVGENDGNLLDESTFTQLIQQLNETVAVILEYLEDA 120
           AYSLK++NVVVAYSLVEKIIKLISNVGENDGNLLDE T T+LI+QLNET+AV+LEYLEDA
Sbjct: 332 AYSLKQRNVVVAYSLVEKIIKLISNVGENDGNLLDEDTLTKLIRQLNETIAVVLEYLEDA 391

Query: 121 KERGQKKGDDLLASVRIIGSYLAEAPLACKEKVQDLLGYMLSVEGEDEQRPFYSVCFLLP 180
           KE GQ+KG+DLLASVRIIGSYLAEAPLA KEKVQDLLGYMLS+EG DEQRPF SVCFLLP
Sbjct: 392 KEHGQRKGNDLLASVRIIGSYLAEAPLASKEKVQDLLGYMLSIEGADEQRPFRSVCFLLP 451

Query: 181 MLCQITMKVEGCKALASCGELKAVLDCLSNLIGSNGYTVEDSSCIFLACDIIMNLLMKKD 240
           +LCQITM+VEGCKAL  CG L++V DCL+ LI S  + +ED  C+FLACD IMNLL+KKD
Sbjct: 452 LLCQITMEVEGCKALCLCGGLQSVFDCLAKLIRSKHHMLEDDGCVFLACDTIMNLLLKKD 511

Query: 241 KVQLTLDGSVFVDLLKALAYWSENXXXXXXXXXXASICALI 281
           +VQLTLD + FVD+LKALAYWSEN           SICALI
Sbjct: 512 EVQLTLDEAAFVDVLKALAYWSENTDDMSSRMMATSICALI 552


>Medtr3g106410.2 | neurochondrin protein | HC |
           chr3:49176740-49182193 | 20130731
          Length = 435

 Score =  224 bits (571), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 7/141 (4%)

Query: 1   MYGEDWLIRQVSTNDTQDPTPADMCPLLVLEQSRVEIAVLLNELAYLKYEAPQDTSSTAE 60
           ++GEDWLI       +QDPTP +MC LLVLEQSRVEIAVLLNELAYLKY APQDT ++ E
Sbjct: 279 IFGEDWLI-------SQDPTPDNMCLLLVLEQSRVEIAVLLNELAYLKYGAPQDTPASVE 331

Query: 61  AYSLKRQNVVVAYSLVEKIIKLISNVGENDGNLLDESTFTQLIQQLNETVAVILEYLEDA 120
           AYSLK++NVVVAYSLVEKIIKLISNVGENDGNLLDE T T+LI+QLNET+AV+LEYLEDA
Sbjct: 332 AYSLKQRNVVVAYSLVEKIIKLISNVGENDGNLLDEDTLTKLIRQLNETIAVVLEYLEDA 391

Query: 121 KERGQKKGDDLLASVRIIGSY 141
           KE GQ+KG+DLLASVRIIG Y
Sbjct: 392 KEHGQRKGNDLLASVRIIGRY 412