Miyakogusa Predicted Gene

Lj1g3v1852280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1852280.1 tr|A9TFH4|A9TFH4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_92084
,26.62,0.0000000000004,seg,NULL; Neurochondrin,NULL; coiled-coil,NULL;
NEUROCHONDRIN-RELATED,NULL; NEUROCHONDRIN,Neurochond,CUFF.28079.1
         (285 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106410.1 | neurochondrin protein | HC | chr3:49176740-491...   424   e-119
Medtr3g106410.2 | neurochondrin protein | HC | chr3:49176740-491...   219   3e-57

>Medtr3g106410.1 | neurochondrin protein | HC |
           chr3:49176740-49185818 | 20130731
          Length = 620

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 241/306 (78%), Gaps = 28/306 (9%)

Query: 1   MAILQNRV---------------------DWLIRQVSTNDTQDPTPADMCPLLVLEQSRV 39
           MAILQN V                     DWLI       +QDPTP +MC LLVLEQSRV
Sbjct: 254 MAILQNHVAPAERLQALILAESMVSIFGEDWLI-------SQDPTPDNMCLLLVLEQSRV 306

Query: 40  EIAVLLNELAYLKYEAPQDTSSTAEAYSLKRQNVVVAYSLVEKIIKLISNVGENDGNLLD 99
           EIAVLLNELAYLKY APQDT ++ EAYSLK++NVVVAYSLVEKIIKLISNVGENDGNLLD
Sbjct: 307 EIAVLLNELAYLKYGAPQDTPASVEAYSLKQRNVVVAYSLVEKIIKLISNVGENDGNLLD 366

Query: 100 ESTFTQLIQQLNETVAVILEYLEDAKERGQKKGDDLLASVRIIGSYLAEAPLACKEKVQD 159
           E T T+LI+QLNET+AV+LEYLEDAKE GQ+KG+DLLASVRIIGSYLAEAPLA KEKVQD
Sbjct: 367 EDTLTKLIRQLNETIAVVLEYLEDAKEHGQRKGNDLLASVRIIGSYLAEAPLASKEKVQD 426

Query: 160 LLGYMLSVEGEDEQRPFYSVCFLLPMLCQITMKVEGCKALASCGELKAVLDCLSNLIGSN 219
           LLGYMLS+EG DEQRPF SVCFLLP+LCQITM+VEGCKAL  CG L++V DCL+ LI S 
Sbjct: 427 LLGYMLSIEGADEQRPFRSVCFLLPLLCQITMEVEGCKALCLCGGLQSVFDCLAKLIRSK 486

Query: 220 GYTVEDSSCIFLACDIIMNLLMKKDKVQLTLDGSVFVDLLKALAYWSENXXXXXXXXXXA 279
            + +ED  C+FLACD IMNLL+KKD+VQLTLD + FVD+LKALAYWSEN           
Sbjct: 487 HHMLEDDGCVFLACDTIMNLLLKKDEVQLTLDEAAFVDVLKALAYWSENTDDMSSRMMAT 546

Query: 280 SICALI 285
           SICALI
Sbjct: 547 SICALI 552


>Medtr3g106410.2 | neurochondrin protein | HC |
           chr3:49176740-49182193 | 20130731
          Length = 435

 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/166 (69%), Positives = 128/166 (77%), Gaps = 28/166 (16%)

Query: 1   MAILQNRV---------------------DWLIRQVSTNDTQDPTPADMCPLLVLEQSRV 39
           MAILQN V                     DWLI       +QDPTP +MC LLVLEQSRV
Sbjct: 254 MAILQNHVAPAERLQALILAESMVSIFGEDWLI-------SQDPTPDNMCLLLVLEQSRV 306

Query: 40  EIAVLLNELAYLKYEAPQDTSSTAEAYSLKRQNVVVAYSLVEKIIKLISNVGENDGNLLD 99
           EIAVLLNELAYLKY APQDT ++ EAYSLK++NVVVAYSLVEKIIKLISNVGENDGNLLD
Sbjct: 307 EIAVLLNELAYLKYGAPQDTPASVEAYSLKQRNVVVAYSLVEKIIKLISNVGENDGNLLD 366

Query: 100 ESTFTQLIQQLNETVAVILEYLEDAKERGQKKGDDLLASVRIIGSY 145
           E T T+LI+QLNET+AV+LEYLEDAKE GQ+KG+DLLASVRIIG Y
Sbjct: 367 EDTLTKLIRQLNETIAVVLEYLEDAKEHGQRKGNDLLASVRIIGRY 412