Miyakogusa Predicted Gene
- Lj1g3v1821080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1821080.1 Non Characterized Hit- tr|K4DCC0|K4DCC0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,25.05,3e-17,
,CUFF.28101.1
(430 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g106220.1 | two-component response regulator ARR12-like pr... 414 e-115
Medtr1g013170.1 | response regulator | HC | chr1:2892386-2894964... 127 2e-29
Medtr1g013180.1 | response regulator | LC | chr1:2902323-2906821... 84 2e-16
Medtr2g450070.1 | two-component response regulator ARR12-like pr... 79 1e-14
Medtr2g450070.3 | two-component response regulator ARR12-like pr... 79 1e-14
Medtr2g450070.2 | two-component response regulator ARR12-like pr... 69 6e-12
>Medtr3g106220.1 | two-component response regulator ARR12-like
protein | HC | chr3:49062704-49057734 | 20130731
Length = 645
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/428 (56%), Positives = 283/428 (66%), Gaps = 44/428 (10%)
Query: 4 LQKYRLYLKRISSLSCMASQQTSMMAALGSIDRSYLKMGSMSGVGHLQPVNGLGQFHNNA 63
LQKYRLYLKRIS C+A+QQ SM+AALGS D+SYL+MG G G FHNNA
Sbjct: 246 LQKYRLYLKRIS---CVANQQASMVAALGSADQSYLRMG------------GSGHFHNNA 290
Query: 64 FKSFSPSGIISRLNTAAGLDVHGFQTSGVLQLGQSQYLNNFKDDQLNIQPATVPVNPNRV 123
F+SFSPSGII LNT L+ HGF SG+LQLGQS+ LNN +DQL Q A PVN N +
Sbjct: 291 FRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSCNDQLKFQSAITPVNQNIL 350
Query: 124 RGMSVTMGLDQLQDNMGVIPVQNMTTDFDRRTTTSPISNKLPDQRARITTSVSHTPLLGS 183
+GM +++G D LQ++ GVI VQN+ TD TT PI NK PDQR TS SH P LG
Sbjct: 351 QGMPMSIGFDHLQNSKGVISVQNLNTDV---KTTFPIPNKFPDQRPSFATSSSHPPSLGI 407
Query: 184 LNNALMLETHPQDKPGGIGYENSSSAG--AFQHSEIAFSLLDKGRYTDNWSSDVKSSAIM 241
NN LML+THP+ K GGIG SS+ A QHSE +FS+LD+GR+ NWSSDV S I
Sbjct: 408 SNNGLMLDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGGNWSSDVPISGIQ 467
Query: 242 TNSYPPSECFRQTATPPSIDNMASLPL--------------QGVNFTNKPGQTNSNVPFQ 287
TNS+ SECFRQTA PPS DNMASLPL QG+ FTN P N N+PFQ
Sbjct: 468 TNSFSSSECFRQTAVPPS-DNMASLPLQAGYSGGSLPDMHSQGMIFTNSPEYINGNLPFQ 526
Query: 288 GWDDHNQNATYYSNVIDGSISSPTTVNEAVVPAGHTPTNSTMPKTLDYNFCDPLQMKRDG 347
GW+D NQ+ATY+SNV GS++S VN AVVP G T T S TLD F +P+QMK G
Sbjct: 527 GWEDRNQDATYHSNVTCGSMNSLAPVNGAVVPPGQTATES----TLDTKFFNPIQMKHAG 582
Query: 348 FVELTEDTPLKQHQGNIMNQQKPQESCFSNNFGSLEDLVYSMMAQEQHKMKLLDADLICD 407
F ELTE + +Q NI++QQK FSNN GSLE L SMM QEQ KMKLL D ICD
Sbjct: 583 FAELTECSSSRQSPANIISQQK-----FSNNLGSLEYLASSMMGQEQDKMKLLGGDFICD 637
Query: 408 NYCGGISM 415
NY G+S+
Sbjct: 638 NYSDGVSL 645
>Medtr1g013170.1 | response regulator | HC | chr1:2892386-2894964 |
20130731
Length = 497
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 160/346 (46%), Gaps = 94/346 (27%)
Query: 4 LQKYRLYLKRISSLSCMASQQTSMMAALGSIDRS-YLKMGSMSGVG-HLQPVNGLGQFHN 61
LQKYRLYLKRIS C +Q M AAL S + YL+ SGVG HL +NG QFHN
Sbjct: 239 LQKYRLYLKRIS---CAEDKQDHMAAALASSSDASYLR----SGVGGHLHTLNGSTQFHN 291
Query: 62 --NAFKSF-SPSGIISRLNTAAGLDVHGFQTSGVLQLGQSQYLNNFKDDQLNIQPATVPV 118
N F+SF S G+IS NT +++HG +SG LQ Q+ LNN DDQL Q A
Sbjct: 292 HYNPFRSFPSGGGMISSFNTPNNVNMHGLPSSGTLQPIQTHNLNNSTDDQLKFQSALTRG 351
Query: 119 NPNRVRGMSVTMGLDQLQDNMGVIPVQNMTTDFDRRTTTSPISNKLPDQRARITTSVSHT 178
NPN V Q ++ + P+QNMT N LP+
Sbjct: 352 NPNDV------------QRDISISPIQNMT-------------NNLPN------------ 374
Query: 179 PLLGSLNNALMLETHPQDKPGGIGYENSSSAGAFQHSEIAFSLLDKGRYTDNWSSDVKSS 238
NN LMLE +PQ+K G GY+N +S Q+S+ FSLL+ R WSS ++
Sbjct: 375 --FSFTNNPLMLEGNPQEKQIGEGYKNLAS----QNSQY-FSLLENRRCNRIWSSTMQLP 427
Query: 239 AIMTNSYPPSECFRQTATPPSIDNMASLPLQGVNFTNKPGQTNSNVPFQGWDDHNQN--A 296
T+SY P E F A P ++ FQGWD++N + +
Sbjct: 428 G--TSSYLPRESFNHAAMP-------------------------HLSFQGWDNNNNHDGS 460
Query: 297 TYYSNVIDGSISSPTTVNEAVVPAGHTPTNSTMPKTLDYNFCDPLQ 342
+ SNVI SI S VV LDYN+ D +Q
Sbjct: 461 HHSSNVIGNSIGSSMIPGMNVV---------EQEGNLDYNYGDSVQ 497
>Medtr1g013180.1 | response regulator | LC | chr1:2902323-2906821 |
20130731
Length = 681
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 100/208 (48%), Gaps = 35/208 (16%)
Query: 213 QHSEIAFSLLDKGRYTDNWSSDVKSSAIMTNSYPPSECFRQTATPPSIDNMASLPLQGVN 272
QHS+ + LL+K R D WSS ++ TNSY P E F A P NM S QG+
Sbjct: 506 QHSQFSHPLLEKRRCNDIWSSPMQQLP-ETNSYLPKEGFVHAAAMPPTYNMNS---QGII 561
Query: 273 FTNKPGQTNSNVPFQGWDDHNQNATYYSNVIDGSISSPTTVNEAVVPAGHTPTNSTMPK- 331
F +++NVPFQGWD+++ N DGS V +V P+ N+ P+
Sbjct: 562 FN-----SSNNVPFQGWDNNHNNH-------DGSYHPSHVVGNSVGPSMIHVLNAIEPEG 609
Query: 332 TLDYNFCDPLQMKRDGFVELTEDTPLKQHQGNIMNQQ-KPQESCFSNNFGSLEDLVYSMM 390
LD N+CD + EL E LK H+ +MN Q K S SN SLED++ M+
Sbjct: 610 NLDNNYCDRI-------AELHEVPSLKPHEVYMMNNQMKAGNSHMSNELDSLEDVMRVMI 662
Query: 391 AQEQHKMKLLDADLICDNYCGGISMLQQ 418
+Q + N+ GG SM +Q
Sbjct: 663 KPKQ----------LYANFSGGTSMPRQ 680
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 73/128 (57%), Gaps = 24/128 (18%)
Query: 4 LQKYRLYLKRISSLSCMASQQTSMMAALGS-IDRSYLKMGSMSGVG-HLQPVNGLGQFHN 61
LQKYRLYLK+ Q +M LG+ D+SY +MG +SGVG H+QP+N QFHN
Sbjct: 390 LQKYRLYLKK----------QANMAEVLGNDSDKSYSRMGYISGVGAHVQPLNDPRQFHN 439
Query: 62 N--AFKSFSPSGIISRLNT-AAGLDVHGFQTSGVLQLGQSQYLNNFKDDQLNIQPATVPV 118
N AF+SF SG+ +RLNT ++ +++HGF + LNN D L Q A
Sbjct: 440 NNSAFRSFPSSGMSTRLNTPSSSVNMHGF---------PAHNLNNSTGDHLRFQSAIARS 490
Query: 119 NPNRVRGM 126
N N V+ M
Sbjct: 491 NLNDVQRM 498
>Medtr2g450070.1 | two-component response regulator ARR12-like
protein | HC | chr2:22084494-22088472 | 20130731
Length = 688
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 185/457 (40%), Gaps = 86/457 (18%)
Query: 4 LQKYRLYLKRISSLSCMASQQTSMMAALGSIDRSYLKMGSMSGVGHLQPVNGLGQFHNNA 63
LQKYRLYLK+ + T+M+A LG + SYL+M + G G+ +
Sbjct: 261 LQKYRLYLKKATP------HDTNMVAGLGGGNDSYLRMRGIDGYADFCTSTRSGRIGSTT 314
Query: 64 FKSFSPSGIISRLNTAAGLDVHGFQTSGVLQLGQSQYLNN--FKDDQLNIQPATVPVNPN 121
S++PSG+ RLN+ AGL++ G +S ++Q QS N+ +Q + VP N
Sbjct: 315 LPSYAPSGVFGRLNSPAGLNMRGINSSILIQPVQSHNTNSSWIPANQSSSLLHGVPTELN 374
Query: 122 RVRGMSVTMGLDQLQ--DNMGVIPVQNMTTDF-DRRTTTSPISNKLPDQRARITTSVSHT 178
+ + + G+ QL D+ G +DF D R S SN++
Sbjct: 375 QSKLNNSAAGISQLNQIDSTGFAA----ASDFHDSRAINS--SNQVS------------- 415
Query: 179 PLLGSLNNALMLETHPQDKPGGIGYENSSSAG--AFQHSEIAF----SLLDKGRYTDNWS 232
N+ L+L+ + Q + N SS G + + I +LLD R ++NW
Sbjct: 416 ------NHHLLLQGNSQQTHNAGSFRNQSSVGSASLGNKNITIGGSSNLLDYNRCSENWQ 469
Query: 233 SDVKSSAIMTNSYPPSECFRQTATP-PSIDNMASLPL---QGVNFT-------------N 275
S + +S P + F P S+ PL V+F+ N
Sbjct: 470 SQAQLPKFPASSLPVCKSFNNDQLPLTSVTAYNQSPLIANSSVDFSSGNTITVALEEARN 529
Query: 276 KPG-----------QTNSNVPFQGWD----DHNQNATYYSNVIDGSISSPTTVNEAVVPA 320
P Q +S P Q W D++QN N ++ + S + + A
Sbjct: 530 VPRCQEDGLIGNFIQPSSYAPRQSWAENKPDYSQNTGRPFNPVNSQVCSSRALTNS---A 586
Query: 321 GH--TPTNSTMPKTLDYNFCDPLQMKRDGFVELTE------DTPLKQHQGNIMNQQKPQE 372
H + + +D +F D + E D + + + + + Q
Sbjct: 587 SHNINQSKTVCSNRVDTSFVDQVYGASTSVARYPEAEKFSSDVQVNSNDAYKLEKMRSQV 646
Query: 373 SCFSNNFGSLEDLVYSMMAQEQHKMKLLDADLICDNY 409
+ FG+LED++ +++ +EQ +M L+D ++ D+Y
Sbjct: 647 G-YVEGFGTLEDIMGAIVKREQIEMTLMDGEMCYDSY 682
>Medtr2g450070.3 | two-component response regulator ARR12-like
protein | HC | chr2:22084494-22088472 | 20130731
Length = 688
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 185/457 (40%), Gaps = 86/457 (18%)
Query: 4 LQKYRLYLKRISSLSCMASQQTSMMAALGSIDRSYLKMGSMSGVGHLQPVNGLGQFHNNA 63
LQKYRLYLK+ + T+M+A LG + SYL+M + G G+ +
Sbjct: 261 LQKYRLYLKKATP------HDTNMVAGLGGGNDSYLRMRGIDGYADFCTSTRSGRIGSTT 314
Query: 64 FKSFSPSGIISRLNTAAGLDVHGFQTSGVLQLGQSQYLNN--FKDDQLNIQPATVPVNPN 121
S++PSG+ RLN+ AGL++ G +S ++Q QS N+ +Q + VP N
Sbjct: 315 LPSYAPSGVFGRLNSPAGLNMRGINSSILIQPVQSHNTNSSWIPANQSSSLLHGVPTELN 374
Query: 122 RVRGMSVTMGLDQLQ--DNMGVIPVQNMTTDF-DRRTTTSPISNKLPDQRARITTSVSHT 178
+ + + G+ QL D+ G +DF D R S SN++
Sbjct: 375 QSKLNNSAAGISQLNQIDSTGFAA----ASDFHDSRAINS--SNQVS------------- 415
Query: 179 PLLGSLNNALMLETHPQDKPGGIGYENSSSAG--AFQHSEIAF----SLLDKGRYTDNWS 232
N+ L+L+ + Q + N SS G + + I +LLD R ++NW
Sbjct: 416 ------NHHLLLQGNSQQTHNAGSFRNQSSVGSASLGNKNITIGGSSNLLDYNRCSENWQ 469
Query: 233 SDVKSSAIMTNSYPPSECFRQTATP-PSIDNMASLPL---QGVNFT-------------N 275
S + +S P + F P S+ PL V+F+ N
Sbjct: 470 SQAQLPKFPASSLPVCKSFNNDQLPLTSVTAYNQSPLIANSSVDFSSGNTITVALEEARN 529
Query: 276 KPG-----------QTNSNVPFQGWD----DHNQNATYYSNVIDGSISSPTTVNEAVVPA 320
P Q +S P Q W D++QN N ++ + S + + A
Sbjct: 530 VPRCQEDGLIGNFIQPSSYAPRQSWAENKPDYSQNTGRPFNPVNSQVCSSRALTNS---A 586
Query: 321 GH--TPTNSTMPKTLDYNFCDPLQMKRDGFVELTE------DTPLKQHQGNIMNQQKPQE 372
H + + +D +F D + E D + + + + + Q
Sbjct: 587 SHNINQSKTVCSNRVDTSFVDQVYGASTSVARYPEAEKFSSDVQVNSNDAYKLEKMRSQV 646
Query: 373 SCFSNNFGSLEDLVYSMMAQEQHKMKLLDADLICDNY 409
+ FG+LED++ +++ +EQ +M L+D ++ D+Y
Sbjct: 647 G-YVEGFGTLEDIMGAIVKREQIEMTLMDGEMCYDSY 682
>Medtr2g450070.2 | two-component response regulator ARR12-like
protein | HC | chr2:22084494-22087644 | 20130731
Length = 666
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 126/295 (42%), Gaps = 53/295 (17%)
Query: 4 LQKYRLYLKRISSLSCMASQQTSMMAALGSIDRSYLKMGSMSGVGHLQPVNGLGQFHNNA 63
LQKYRLYLK+ + T+M+A LG + SYL+M + G G+ +
Sbjct: 261 LQKYRLYLKKATP------HDTNMVAGLGGGNDSYLRMRGIDGYADFCTSTRSGRIGSTT 314
Query: 64 FKSFSPSGIISRLNTAAGLDVHGFQTSGVLQLGQSQYLNN--FKDDQLNIQPATVPVNPN 121
S++PSG+ RLN+ AGL++ G +S ++Q QS N+ +Q + VP N
Sbjct: 315 LPSYAPSGVFGRLNSPAGLNMRGINSSILIQPVQSHNTNSSWIPANQSSSLLHGVPTELN 374
Query: 122 RVRGMSVTMGLDQLQ--DNMGVIPVQNMTTDF-DRRTTTSPISNKLPDQRARITTSVSHT 178
+ + + G+ QL D+ G +DF D R S SN++
Sbjct: 375 QSKLNNSAAGISQLNQIDSTGFAA----ASDFHDSRAINS--SNQVS------------- 415
Query: 179 PLLGSLNNALMLETHPQDKPGGIGYENSSSAG--AFQHSEIAF----SLLDKGRYTDNWS 232
N+ L+L+ + Q + N SS G + + I +LLD R ++NW
Sbjct: 416 ------NHHLLLQGNSQQTHNAGSFRNQSSVGSASLGNKNITIGGSSNLLDYNRCSENWQ 469
Query: 233 SDVKSSAIMTNSYPPSECFRQTATPPSIDNMASLPLQGVNFTNK-PGQTNSNVPF 286
S + +S P + F N LPL V N+ P NS+V F
Sbjct: 470 SQAQLPKFPASSLPVCKSF----------NNDQLPLTSVTAYNQSPLIANSSVDF 514