Miyakogusa Predicted Gene

Lj1g3v1819850.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1819850.2 tr|Q6Z1L1|Q6Z1L1_ORYSJ Os08g0278900 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0091M20.30
PE=4,29.63,0.038,MIR,MIR motif; no description,NULL; seg,NULL; Domain
in ryanodine and inositol trisphospha,MIR motif,CUFF.29098.2
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106130.1 | stromal cell-derived factor-like protein | HC ...   370   e-103
Medtr3g106130.2 | stromal cell-derived factor-like protein | HC ...   359   1e-99
Medtr3g106130.3 | stromal cell-derived factor-like protein | HC ...   207   8e-54

>Medtr3g106130.1 | stromal cell-derived factor-like protein | HC |
           chr3:48990843-48994869 | 20130731
          Length = 223

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/187 (93%), Positives = 180/187 (96%)

Query: 40  EGVEVQVTYGSVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPDVDDANSYWIVRPEPG 99
           EGVEVQ+TYGSV+KLMHEKTKFRLHSHDVPYGSGSGQQSVTGFP VDDANSYWIVRPEPG
Sbjct: 34  EGVEVQITYGSVIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDANSYWIVRPEPG 93

Query: 100 TGAKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKVFI 159
           T AKQGD IKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGE+ESDTGDYW++ I
Sbjct: 94  TSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGENESDTGDYWRLLI 153

Query: 160 EGSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCAVREKRADNVWLAAEGVY 219
           EGSGKTWKQDQ+ RLQHIDT GYLHSHDKKYSRIAGGQQEVC VREKRADNVWLAAEGVY
Sbjct: 154 EGSGKTWKQDQRFRLQHIDTSGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVY 213

Query: 220 LPVTESK 226
           LPVTESK
Sbjct: 214 LPVTESK 220


>Medtr3g106130.2 | stromal cell-derived factor-like protein | HC |
           chr3:48990859-48994860 | 20130731
          Length = 243

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/207 (84%), Positives = 180/207 (86%), Gaps = 20/207 (9%)

Query: 40  EGVEVQVTYGSVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPDVDDANSYW------- 92
           EGVEVQ+TYGSV+KLMHEKTKFRLHSHDVPYGSGSGQQSVTGFP VDDANSYW       
Sbjct: 34  EGVEVQITYGSVIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDANSYWARDLGVC 93

Query: 93  -------------IVRPEPGTGAKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLE 139
                        IVRPEPGT AKQGD IKSGTIIRLQHMRTRKWLHSHLHASPISGNLE
Sbjct: 94  FSQSLMSNARSANIVRPEPGTSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLE 153

Query: 140 VSCFGGESESDTGDYWKVFIEGSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQE 199
           VSCFGGE+ESDTGDYW++ IEGSGKTWKQDQ+ RLQHIDT GYLHSHDKKYSRIAGGQQE
Sbjct: 154 VSCFGGENESDTGDYWRLLIEGSGKTWKQDQRFRLQHIDTSGYLHSHDKKYSRIAGGQQE 213

Query: 200 VCAVREKRADNVWLAAEGVYLPVTESK 226
           VC VREKRADNVWLAAEGVYLPVTESK
Sbjct: 214 VCGVREKRADNVWLAAEGVYLPVTESK 240


>Medtr3g106130.3 | stromal cell-derived factor-like protein | HC |
           chr3:48990843-48993044 | 20130731
          Length = 158

 Score =  207 bits (526), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 98/104 (94%), Positives = 100/104 (96%), Gaps = 1/104 (0%)

Query: 40  EGVEVQVTYGSVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPDVDDANSYWIVRPEPG 99
           EGVEVQ+TYGSV+KLMHEKTKFRLHSHDVPYGSGSGQQSVTGFP VDDANSYWIVRPEPG
Sbjct: 34  EGVEVQITYGSVIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDANSYWIVRPEPG 93

Query: 100 TGAKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCF 143
           T AKQGD IKSGTIIRLQHMRTRKWLHSHLHASPISGNLEV CF
Sbjct: 94  TSAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEV-CF 136