Miyakogusa Predicted Gene
- Lj1g3v1815490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1815490.1 tr|G7J9U6|G7J9U6_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_3g105990 PE=3 SV=1,69.31,0,no
description,NULL; beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; seg,NULL;
RN,NODE_40924_length_1753_cov_101.549911.path1.1
(593 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC ... 892 0.0
Medtr0189s0050.1 | DNA-directed RNA polymerase | HC | scaffold01... 772 0.0
Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC ... 192 6e-49
Medtr8g023445.1 | DNA-directed RNA polymerase | LC | chr8:845866... 134 2e-31
Medtr1g022135.1 | DNA-directed RNA polymerase | HC | chr1:686549... 55 2e-07
>Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC |
chr3:48883860-48876376 | 20130731
Length = 1188
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/593 (71%), Positives = 480/593 (80%), Gaps = 12/593 (2%)
Query: 1 MGHIGSSKDGIGINLXXXXXXXXXXXXXXXXXXXXXXSSSNAEILKELGEDMVKHFCTKA 60
M HIGSSKD N SNAEIL ELG+DMVK+FC KA
Sbjct: 1 MEHIGSSKDANNTNYTEMDIDLDDDE-----------DQSNAEILNELGDDMVKYFCKKA 49
Query: 61 SRMFFDEHGLVSHQINSYNQFIAAGLQAAFDAFGDLNVTPSYDPSKKGDNEHFKYATVKF 120
S MFFD++GL+SHQINSYNQFI +GLQ+AFD+FGDL VTP +DPSKKG +EH++YATVKF
Sbjct: 50 SVMFFDQYGLISHQINSYNQFINSGLQSAFDSFGDLTVTPGFDPSKKGADEHYRYATVKF 109
Query: 121 GKVTLDRPKFWGGAANAQEFKMLPRHARLQRMTYAAKMKVTVEVQVFTPHKVRSDKFKTG 180
GKVTL+RPKFW G NAQE KMLPRHARLQRMTYA+KMKV V +QV+ KVRSDKFKTG
Sbjct: 110 GKVTLERPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVDVHIQVYVMKKVRSDKFKTG 169
Query: 181 KEDYXXXXXXXXXXXXXXXGRLPVMVMSDLCWMKEAEKGDCDFDHGGYFLIKGAEKAFVA 240
KE+Y GRLPVMV SDLCWM EAEKGDC+FDHGGYFLIKGAEK F+A
Sbjct: 170 KEEYIDKDIKWEDTREITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIA 229
Query: 241 QEQLFLKKLWVSNTPDWAIGYKSLNKRNRLILKLVGNSKFEEINNGEKVLSVYFLGVEVP 300
QEQ+FLK+LWVSN P WA+ +KS KRNR+++KLV S E I NGEK+L+VYFL VE+P
Sbjct: 230 QEQIFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVEGST-EGITNGEKLLTVYFLSVEIP 288
Query: 301 VWILFFSLGVSSDKEIIDLIDYGNEDTQIQNIFFGSIRDADEKCSGFRKGKNALHYMEEH 360
VWILFF+LGV+SDKEI+DLIDYG + +I+NI F SIR+AD+KC FR+GKNAL ++EE
Sbjct: 289 VWILFFALGVTSDKEIVDLIDYGEANGRIENILFASIREADDKCEAFRRGKNALLFLEER 348
Query: 361 VKGIQYPPSESMEECLNLYLFPGSSGLNRKARFLAYMVKSLLLAYTGRRKCDNRDDFRNK 420
VKG+Q+PP+ES++EC N+Y+FP GL RKAR+LAYMVK LLLAYTGRRK DNRDDFRNK
Sbjct: 349 VKGVQFPPAESIDECFNMYVFPNVKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNK 408
Query: 421 RFXXXXXXXXXXXKVHFAHARKRMSKALQRDLNGDRDVRPIEHYLDASIITNGLQRAFST 480
R KVHFAHARKRM KALQRDL G+R+VR IEHYLDASIITNGLQRAFST
Sbjct: 409 RLELAGELLEREIKVHFAHARKRMGKALQRDLYGEREVRQIEHYLDASIITNGLQRAFST 468
Query: 481 GAWTHPYKRLERTSGVVANLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVC 540
GAWTHP+KR+ER SGVVA LGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVC
Sbjct: 469 GAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVC 528
Query: 541 FLSTPDGENCGLVKNLSVTGLVSTNISESIFPQLLDCGMEELVDDTTTFLSKK 593
FLSTPDGENCGLVKNL+VTG+VST+++ESI PQL DCGMEELVDDTTT L KK
Sbjct: 529 FLSTPDGENCGLVKNLAVTGVVSTDVTESILPQLSDCGMEELVDDTTTVLGKK 581
>Medtr0189s0050.1 | DNA-directed RNA polymerase | HC |
scaffold0189:29521-32643 | 20130731
Length = 517
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/492 (73%), Positives = 412/492 (83%), Gaps = 1/492 (0%)
Query: 40 SNAEILKELGEDMVKHFCTKASRMFFDEHGLVSHQINSYNQFIAAGLQAAFDAFGDLNVT 99
SNAEIL ELGEDM K+FC +AS MFFD++GL+SHQINSYNQFI +GLQ+AFD+FGDL VT
Sbjct: 27 SNAEILNELGEDMFKYFCKRASVMFFDQYGLISHQINSYNQFITSGLQSAFDSFGDLTVT 86
Query: 100 PSYDPSKKGDNEHFKYATVKFGKVTLDRPKFWGGAANAQEFKMLPRHARLQRMTYAAKMK 159
P +DPSKK +EH++YATVKFG VTL+RPKFW G NAQE KMLPRHARLQRMTYA+K+K
Sbjct: 87 PGFDPSKKAVDEHYQYATVKFGNVTLERPKFWCGEGNAQEMKMLPRHARLQRMTYASKVK 146
Query: 160 VTVEVQVFTPHKVRSDKFKTGKEDYXXXXXXXXXXXXXXXGRLPVMVMSDLCWMKEAEKG 219
V V++QV+ P KVRSDKFKTGKE+Y GRLPVMV SDLCWM EAEKG
Sbjct: 147 VDVQLQVYVPKKVRSDKFKTGKEEYIDREIKLDETREITIGRLPVMVKSDLCWMSEAEKG 206
Query: 220 DCDFDHGGYFLIKGAEKAFVAQEQLFLKKLWVSNTPDWAIGYKSLNKRNRLILKLVGNSK 279
DC+FDHGGYFLIKGAEK F+AQEQ+FLK+LWVSN P WA+ +KS KRNR+++KLV S
Sbjct: 207 DCEFDHGGYFLIKGAEKIFIAQEQVFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVEGST 266
Query: 280 FEEINNGEKVLSVYFLGVEVPVWILFFSLGVSSDKEIIDLIDYGNEDTQIQNIFFGSIRD 339
E I NGEK+L+VYFL VE+PVWILFF+LGV+SDKEI+DLIDYG D +I+NI F SIR+
Sbjct: 267 -EGITNGEKLLTVYFLSVEIPVWILFFALGVTSDKEIVDLIDYGESDGRIENILFASIRE 325
Query: 340 ADEKCSGFRKGKNALHYMEEHVKGIQYPPSESMEECLNLYLFPGSSGLNRKARFLAYMVK 399
AD+KC FR+GKNAL ++EE VKG+Q+PP+ES++EC N+Y+FP GL RKAR+LAYMVK
Sbjct: 326 ADDKCEAFRRGKNALLFLEERVKGVQFPPAESIDECFNMYVFPNIKGLKRKARYLAYMVK 385
Query: 400 SLLLAYTGRRKCDNRDDFRNKRFXXXXXXXXXXXKVHFAHARKRMSKALQRDLNGDRDVR 459
LLLAYTGRRK DNRDDFRNKR KVHFAHARKRM KALQRDL GDRDVR
Sbjct: 386 VLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGDRDVR 445
Query: 460 PIEHYLDASIITNGLQRAFSTGAWTHPYKRLERTSGVVANLGRTNPLQTMAELRRTRQQV 519
IEHYLDASIITNGLQRAFSTGAWTHP+KR+ER SGVVA LGRTNPLQT+AELRRTRQQV
Sbjct: 446 QIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTIAELRRTRQQV 505
Query: 520 QYTGKVGDARYP 531
QYTGKVGDARYP
Sbjct: 506 QYTGKVGDARYP 517
>Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC |
chr1:7523400-7533496 | 20130731
Length = 1195
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 140/534 (26%), Positives = 260/534 (48%), Gaps = 43/534 (8%)
Query: 64 FFDEHGLVSHQINSYNQFIAAGLQAAFDAFGDLNVTP--SYDPSKKGDNEHFKYATVKFG 121
+F+E GLV Q++S+++FI +Q D D+ + P ++P + D Y + FG
Sbjct: 36 YFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYK-ISFG 94
Query: 122 KVTLDRPKFWGGAANAQEFKMLPRHARLQRMTYAAKMKVTVEVQVFTPHKVRSDKFKTGK 181
++ L +P ++ + + P+ ARL+ +TY+A + V V +V K + T
Sbjct: 95 QIYLSKPMMT--ESDGETATLFPKAARLRNLTYSAPLYVDVSKRVI--KKGHDGEEVTET 150
Query: 182 EDYXXXXXXXXXXXXXXXGRLPVMVMSDLCWMKE------AEKGDCDFDHGGYFLIKGAE 235
+D+ G++P+M+ S C + + E G+C +D GGYF+I G+E
Sbjct: 151 QDFTKVFI----------GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 200
Query: 236 KAFVAQEQLFLKKLWV-----SNTPDWAIGYKSL-NKRNR----LILKLVGNSKFEEINN 285
K +AQE++ ++V N + +S+ +NR + ++++ + + ++
Sbjct: 201 KVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSS 260
Query: 286 GEKV-LSVYFLGVEVPVWILFFSLGVSSDKEIIDLIDYGNEDTQIQNIFFGSIRDA---- 340
G+ + ++ ++ E+P+ I+F +LG +DK+I++ I Y DTQ+ + S+ +A
Sbjct: 261 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQ 320
Query: 341 DEKCSGFRKGKNALHYMEEHVKGIQYPPSESMEECLNLYLFPGSSGLNRKARFLAYMVKS 400
+++ + GK K I+Y +E L ++ G +KA + Y++
Sbjct: 321 NQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLP-HVGVGEYCETKKAYYFGYIIHR 379
Query: 401 LLLAYTGRRKCDNRDDFRNKRFXXXXXXXXXXXKVHFAHARKRMSKALQRDLNGDRDVRP 460
LLL GRR D+RD + NKR ++ F + + +Q+ ++ +DV
Sbjct: 380 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN- 438
Query: 461 IEHYLDASIITNGLQRAFSTGAWTHPYKRLERTSGVVANLGRTNPLQTMAELRRTRQQVQ 520
++ + A IT+GL+ + +TG W R +GV L R T++ LRR +
Sbjct: 439 LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIG 497
Query: 521 YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGLVSTNISESIFPQL 574
GK+ R H S WG +C TP+G+ CGLVKNL++ +V + + +P L
Sbjct: 498 REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL--MVYITVGSAAYPIL 549
>Medtr8g023445.1 | DNA-directed RNA polymerase | LC |
chr8:8458667-8488921 | 20130731
Length = 2002
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/527 (24%), Positives = 221/527 (41%), Gaps = 68/527 (12%)
Query: 64 FFDEHGLVSHQINSYNQFIAAGLQAAFDAFGDLNVTPSYDPSKKGDNEHFKYATVKFGKV 123
F GLV ++S+N F+ ++ A + + S P + ++ V+ G+
Sbjct: 894 FLKVRGLVKQHLDSFNYFVNTDIKKIVRA--NCLIKASRYPHIE-----LRFLNVRIGQP 946
Query: 124 TLDRPKFWGGAANAQEFKMLPRHARLQRMTYAAKMKVTVEVQVFTPHKVRSDKFKTGKED 183
++ R P+ RL TY A + V VE +P +K + K D
Sbjct: 947 SITRDGILELVT--------PQTCRLSDRTYDAPIYVDVEYTQGSP----DNKIRVPKTD 994
Query: 184 YXXXXXXXXXXXXXXXGRLPVMVMSDLCWMKE------AEKGDCDFDHGGYFLIKGAEKA 237
GRLP+M+ S C + A+ G+C D GGYF++KG EK
Sbjct: 995 -------------VLIGRLPIMLRSCCCVLSNRDEAELAKLGECPLDPGGYFVVKGNEKV 1041
Query: 238 FVAQEQLFLKKLWVSNTPDWAIGYKSLNKRNRLILKLVGNSKFEEINNGEKV-LSVYFLG 296
+ QEQL ++ + I + +++ +K + EK+ L +
Sbjct: 1042 ILIQEQLSKNRIIIDTDKKKNITASVTSSTDKV------KTKTTILMEKEKLWLELNQFP 1095
Query: 297 VEVPVWILFFSLGVSSDKEIIDLIDYGNEDTQIQNIFFGSIRDADEKCS--GFRKGKNAL 354
+VP+ ++ ++G+ D+E++ LI D + + SI E+C+ G AL
Sbjct: 1096 KKVPLMVVMKAMGMEHDQEVVQLI---GRDPRYSFLLMPSI----EECTKIGIFTQAQAL 1148
Query: 355 HYMEE-----HVKGIQYPPSES-----MEECLNLYLFPGSSGLNRKARFLAYMVKSLLLA 404
Y++ HV G PP E + E + K ++A M++ ++ A
Sbjct: 1149 DYVDSKAVKRHVPGNMQPPKERQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDA 1208
Query: 405 YTGRRKCDNRDDFRNKRFXXXXXXXXXXXKVHFAHARKRMSKALQRDLNGDRDVRP---I 461
+ D++D NKR + F + A+ + L+ R +
Sbjct: 1209 ILNKDAMDDKDYVGNKRLELSGQVISLLFEDLFKSMTTEIKFAVDKLLDKPDKARKFDFL 1268
Query: 462 EHYLDASIITNGLQRAFSTGAWTHPYKRLERTSGVVANLGRTNPLQTMAELRRTRQQVQY 521
++ IT GL+R STG + ++ + SGV L R + + + ++ R + Q +
Sbjct: 1269 TQLINRDCITPGLERTLSTGNFDVKRFKMHK-SGVTQVLQRLSFISALGQMTRVQPQFEK 1327
Query: 522 TGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGLVSTNISE 568
+ KV R PS WG +C TP+GE+CGLVKNL++ V+T+ E
Sbjct: 1328 SRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEE 1374
>Medtr1g022135.1 | DNA-directed RNA polymerase | HC |
chr1:6865496-6872581 | 20130731
Length = 299
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 64/229 (27%)
Query: 144 PRHARLQRMTYAAKMKVTVEVQVFTPHKVRSDKFKTGKEDYXXXXXXXXXXXXXXXGRLP 203
P+ RL TYAA + V +E + +P +R + G +P
Sbjct: 11 PQTCRLSDRTYAAPITVDIEYTLGSPDNLRKE-----------------TRPEVNIGSMP 53
Query: 204 VMVMSDLCWMKE------AEKGDCDFDHGGYFLIKGAEKAFVAQEQLFLKKLWVSNTPDW 257
+M+ S C + A+ G+C D GGYF+IKG EK +
Sbjct: 54 IMLRSCCCVLNNRDEDELAKLGECPLDPGGYFIIKGNEK-------------------HY 94
Query: 258 AIGYKSLNKRNRLILKLVGNSKFEEINNGEKVLSVYFLGVEVPVWILFFSLGVSSDKEII 317
I YK + N+ N + GE V VP+ ++ ++G+ D+E++
Sbjct: 95 CICYKQY-RENK-------NKNYHFDGKGEDV---------VPLMVVMKAMGMEIDQEVV 137
Query: 318 DLIDYGNEDTQIQNIFFGSIRDADEKCSGFRKGKNALHYMEEHVKGIQY 366
LI D + + SI + C F + + AL Y++ KG ++
Sbjct: 138 QLI---GRDPRYSFLLMPSIEEY-INCRVFTQAQ-ALEYLDSKAKGPRF 181