Miyakogusa Predicted Gene
- Lj1g3v1810110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1810110.1 tr|A9RVE0|A9RVE0_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,26.61,0.00000000004,CGI-12 PROTEIN-RELATED,NULL;
Mitochondrial termination factor repeats,Mitochodrial transcription
ter,CUFF.27991.1
(346 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g041630.1 | transcription termination factor family protei... 464 e-131
Medtr2g049780.1 | transcription termination factor family protei... 206 3e-53
Medtr2g067230.1 | transcription termination factor family protei... 167 1e-41
Medtr7g081270.1 | transcription termination factor family protei... 114 2e-25
Medtr2g034600.3 | transcription termination factor family protei... 112 7e-25
Medtr2g034600.1 | transcription termination factor family protei... 112 8e-25
Medtr2g034600.2 | transcription termination factor family protei... 111 8e-25
Medtr5g094610.1 | transcription termination factor family protei... 102 5e-22
Medtr6g003960.1 | transcription termination factor family protei... 97 2e-20
Medtr4g084630.1 | transcription termination factor family protei... 87 2e-17
Medtr4g070060.1 | transcription termination factor family protei... 84 1e-16
Medtr5g068860.1 | transcription termination factor family protei... 82 6e-16
Medtr1g115415.1 | transcription termination factor family protei... 81 2e-15
Medtr3g092710.1 | plastid transcriptionally active 15 protein | ... 56 4e-08
Medtr8g080990.1 | transcription termination factor family protei... 50 5e-06
>Medtr5g041630.1 | transcription termination factor family protein |
HC | chr5:18278077-18276642 | 20130731
Length = 308
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/309 (77%), Positives = 268/309 (86%), Gaps = 6/309 (1%)
Query: 1 MSIIELHPQFLFSQNPIPKPFQNPTFN---LRIKPLTSIAQFSQQPNTL-PDRGLIFREK 56
M+IIEL+P+FLFSQNPIPKPF NP FN +I I+QFS Q T P+RGLIFREK
Sbjct: 1 MAIIELYPKFLFSQNPIPKPFLNPNFNPKSYQIFNFKPISQFSHQSTTTTPNRGLIFREK 60
Query: 57 SLYLHKLNINPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRD 116
LYL KL +NPEKAF+QNP LR+CPL TLKSVE+CLSS+GI R+ MGRILDMLP+LLT +
Sbjct: 61 VLYLEKLKVNPEKAFKQNPNLRSCPLRTLKSVEQCLSSIGIHRSQMGRILDMLPELLTCE 120
Query: 117 PHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSL 176
P+ D+YP+LDFLL+EV IPY DV KSILRCPRLLVSSVE RLRP+LCFLRELGFVGPHSL
Sbjct: 121 PYSDIYPLLDFLLNEVEIPYHDVHKSILRCPRLLVSSVENRLRPALCFLRELGFVGPHSL 180
Query: 177 TCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFL 236
TCQTTLLLVSSVEDTLLPKVEFL GLGFTR+EVSNM+VRSP LLT SV NLAPK EFFL
Sbjct: 181 TCQTTLLLVSSVEDTLLPKVEFLMGLGFTRVEVSNMVVRSPGLLTFSVDKNLAPKFEFFL 240
Query: 237 KEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRLFEMR 296
KEMNGDVAELKRFPQYFSFSLEGRIKPRHA+LVR G+SLSLQ+MLQ+SDG L RL E+R
Sbjct: 241 KEMNGDVAELKRFPQYFSFSLEGRIKPRHAMLVRLGLSLSLQEMLQISDGDL-IRLLELR 299
Query: 297 LRGL-VGRQ 304
L+GL VG++
Sbjct: 300 LKGLEVGQR 308
>Medtr2g049780.1 | transcription termination factor family protein |
HC | chr2:22364848-22363786 | 20130731
Length = 313
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 149/236 (63%)
Query: 50 GLIFREKSLYLHKLNINPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDML 109
L F+EK L L + I+ KA QNP L T L ++ S+ L S GI + RI M
Sbjct: 66 SLQFKEKILCLEVMGIDSGKALSQNPNLHTATLESIHSIITFLVSKGIQHKDLPRIFGMC 125
Query: 110 PQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELG 169
P++LT DL P+ DFL+H++++P +K I +CPRLL SSV ++L+P+L +L LG
Sbjct: 126 PKILTSSIKTDLNPVFDFLIHDLKVPDHSFRKVIKKCPRLLTSSVVDQLKPALFYLNRLG 185
Query: 170 FVGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLA 229
+L Q +LLVS+VE T++PK++ L LGFT+ E M++R PALLT S+ NN
Sbjct: 186 LRDLEALAYQDCVLLVSNVERTIIPKLKHLESLGFTKEEARCMVLRCPALLTFSIENNFQ 245
Query: 230 PKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSD 285
PK E+F EM G + ELK FPQYFSFSLE RIK RH +V G++L L ML+ +D
Sbjct: 246 PKFEYFSVEMKGKLEELKEFPQYFSFSLENRIKVRHMEVVESGINLPLSLMLKSTD 301
>Medtr2g067230.1 | transcription termination factor family protein |
HC | chr2:28121064-28123893 | 20130731
Length = 328
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 153/274 (55%), Gaps = 18/274 (6%)
Query: 24 PTFNLRIKPLTSIAQFSQQPNTLP---DRGLIFREKSLYLHKLNINPEKAFRQNPTLRTC 80
PTF +R ++ ++ TLP D G F++K LYL + I+ +P L T
Sbjct: 43 PTFFVR----ATVVKWRCPNQTLPPNSDTG--FQKKVLYLESIGIDSFSLIENHPKLVTA 96
Query: 81 PLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQ 140
L +KS + ++ M R++ M P++LT D+ P+ FL EVR+ +++
Sbjct: 97 SLDDIKSTVKYITGMDFSSIEFRRLVGMCPEILTTKV-SDIIPVFTFLHREVRVIGSNIK 155
Query: 141 KSILRCPRLLVSSVEERLRPSLCFLRELGF--VGPHSLTCQTTLLLVSSVEDTLLPKVEF 198
I R PRL++ +V+++LRP++ FL+ +G V H T LL SVED +P++E+
Sbjct: 156 HVINRRPRLIICNVDKQLRPTMYFLQSIGIEEVNKH------THLLSCSVEDKFIPRIEY 209
Query: 199 LRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLE 258
+ +GF+R + ++M R P L S+ NNL PK +F+ EM D+ E+K FP YFSFSLE
Sbjct: 210 FKNIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPHYFSFSLE 269
Query: 259 GRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
RIKPRH V GV L +L+ S+ ++RL
Sbjct: 270 NRIKPRHKRCVEMGVCFPLPLLLKTSEVTFQNRL 303
>Medtr7g081270.1 | transcription termination factor family protein |
HC | chr7:31009132-31008262 | 20130731
Length = 284
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 123/253 (48%), Gaps = 13/253 (5%)
Query: 43 PNTLPDRGLIFREKSLY---LHKLN----INPEKAFRQNPTLRTCPLTTLKSVERCLSSM 95
PN P+R + ++ Y LH L INP P T + + ++ L S
Sbjct: 27 PNRYPNRNGYIKFRTTYNENLHYLKALTIINPNTKPNNLPHPDT--INHILTIITFLKSH 84
Query: 96 GIPRTAMGRILDMLPQLLTRDPH-RDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSV 154
+ R++ P L T L P+ FL ++ D ILRCP LL + V
Sbjct: 85 SFTEADIPRLVHHSPHLFTTSISPTSLSPVFTFLASDLLASVEDSHGLILRCPNLLFTDV 144
Query: 155 EERLRPSLCFLRE-LGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGL-GFTRLEVSNM 212
L+P+L FLRE +G + T + LL + VE + +V FL + GFT E N+
Sbjct: 145 NHILKPTLHFLREEVGVSNLNRPTNRNAHLLNTRVEKMRM-RVRFLEEVVGFTYEEARNV 203
Query: 213 IVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHG 272
R PA+L V NNL PK + +KEM +V ELK+FPQ+F FSL+ RI PRH L G
Sbjct: 204 CARLPAILGYDVENNLWPKFVYLVKEMEREVEELKKFPQFFGFSLDKRIVPRHLHLKERG 263
Query: 273 VSLSLQQMLQVSD 285
V + L +ML D
Sbjct: 264 VRIPLNRMLMWGD 276
>Medtr2g034600.3 | transcription termination factor family protein |
HC | chr2:13233799-13236843 | 20130731
Length = 496
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 109/210 (51%), Gaps = 6/210 (2%)
Query: 84 TLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSI 143
LK + S+G+ + +++ P LLT + + LDFL E + ++ K +
Sbjct: 282 NLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFL-REFGVSEENIGKIL 339
Query: 144 LRCPRLLVSSVEERLRPSLCFLRELGF-VGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGL 202
RCP ++ SVE+ LRP+ + R LG VG C L S+E + P +F
Sbjct: 340 TRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGL--SIEANIKPVTQFFLER 397
Query: 203 GFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIK 262
G+T E+ MI R L T S+ NL PK ++FL M+ +EL +FPQ+F +SLE RIK
Sbjct: 398 GYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELVKFPQFFGYSLEQRIK 456
Query: 263 PRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
PR+ + GV L L Q+L +S E+ L
Sbjct: 457 PRYTRVKISGVRLLLNQVLSLSSSNFEEIL 486
>Medtr2g034600.1 | transcription termination factor family protein |
HC | chr2:13233091-13236843 | 20130731
Length = 557
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 109/210 (51%), Gaps = 6/210 (2%)
Query: 84 TLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSI 143
LK + S+G+ + +++ P LLT + + LDFL E + ++ K +
Sbjct: 343 NLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFL-REFGVSEENIGKIL 400
Query: 144 LRCPRLLVSSVEERLRPSLCFLRELGF-VGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGL 202
RCP ++ SVE+ LRP+ + R LG VG C L S+E + P +F
Sbjct: 401 TRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGL--SIEANIKPVTQFFLER 458
Query: 203 GFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIK 262
G+T E+ MI R L T S+ NL PK ++FL M+ +EL +FPQ+F +SLE RIK
Sbjct: 459 GYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELVKFPQFFGYSLEQRIK 517
Query: 263 PRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
PR+ + GV L L Q+L +S E+ L
Sbjct: 518 PRYTRVKISGVRLLLNQVLSLSSSNFEEIL 547
>Medtr2g034600.2 | transcription termination factor family protein |
HC | chr2:13233091-13236856 | 20130731
Length = 561
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 109/210 (51%), Gaps = 6/210 (2%)
Query: 84 TLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSI 143
LK + S+G+ + +++ P LLT + + LDFL E + ++ K +
Sbjct: 347 NLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQK-INESLDFL-REFGVSEENIGKIL 404
Query: 144 LRCPRLLVSSVEERLRPSLCFLRELGF-VGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGL 202
RCP ++ SVE+ LRP+ + R LG VG C L S+E + P +F
Sbjct: 405 TRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGL--SIEANIKPVTQFFLER 462
Query: 203 GFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIK 262
G+T E+ MI R L T S+ NL PK ++FL M+ +EL +FPQ+F +SLE RIK
Sbjct: 463 GYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELVKFPQFFGYSLEQRIK 521
Query: 263 PRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
PR+ + GV L L Q+L +S E+ L
Sbjct: 522 PRYTRVKISGVRLLLNQVLSLSSSNFEEIL 551
>Medtr5g094610.1 | transcription termination factor family protein |
HC | chr5:41344877-41348219 | 20130731
Length = 503
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 3/201 (1%)
Query: 72 RQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHE 131
RQ L LK+ L +G+P T +G+I+ P L + + L P + +L+ E
Sbjct: 249 RQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEE 308
Query: 132 VRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSLTCQTT---LLLVSSV 188
V I D+ K I P++LV ++ L FL + S+ T LL S+
Sbjct: 309 VGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSI 368
Query: 189 EDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKR 248
+D LLP++ FLR +G ++ ++ +L+LS+ NL PK + + E++ +V L +
Sbjct: 369 DDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTK 428
Query: 249 FPQYFSFSLEGRIKPRHALLV 269
+P Y S SL+ RI+PRH LV
Sbjct: 429 YPMYLSLSLDQRIRPRHKFLV 449
>Medtr6g003960.1 | transcription termination factor family protein |
HC | chr6:35948-29152 | 20130731
Length = 609
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 122/238 (51%), Gaps = 7/238 (2%)
Query: 53 FREKSLYLHKLNI---NPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDML 109
++E +LH + + ++A ++ P L C + LK + + +G+ R + +++
Sbjct: 349 YKEVLAFLHSVKVPKTWTDRAIKRQPQLLGCSTSKLKLMVDQFAELGVQRKKLYQVITRS 408
Query: 110 PQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELG 169
PQLL + P L ++ F + ++ + + RCP + +S+ + L+ + FL +
Sbjct: 409 PQLLLQKPEDFLQVVMFF--ENMGFDKENIGRILARCPEIFATSISKTLQSKIEFLSRIE 466
Query: 170 FVGPHS--LTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNN 227
+ + + LLVS + TL ++ + +G + E++ M+ + LL S+
Sbjct: 467 VSKAYIPLVIRKYPELLVSDINKTLPQRIVYFMKVGLSEKEIALMVRKFSPLLGYSIKEV 526
Query: 228 LAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSD 285
L PK+EF + M V ++ R+P+YFS+SLE +IKPR+ +L + SL+ ML +D
Sbjct: 527 LMPKLEFLVNSMKRPVRDVVRYPRYFSYSLEKKIKPRYRVLKGRNIECSLKDMLAKND 584
>Medtr4g084630.1 | transcription termination factor family protein |
HC | chr4:32962573-32960937 | 20130731
Length = 332
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 108/211 (51%), Gaps = 10/211 (4%)
Query: 78 RTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYP 137
+ CPL ++G+P +G+IL + P+L++ + I+ FL
Sbjct: 112 KLCPLLAF------FQTLGVPEKHIGKILLLNPRLISYSIETKMTEIVKFLASVGLDKNG 165
Query: 138 DVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSLTCQTT---LLLVSSVEDTLLP 194
+ K +++ P ++ SV++RLRP+ FL+ +G H L +L V+ L+
Sbjct: 166 MIGKIMVKDPYIMGYSVDKRLRPTSEFLKSIGLT-EHDLQVLALNFPSILSRDVDKVLVH 224
Query: 195 KVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFS 254
+FL+ GF ++ +++V P +L SV N+L P+++F + M +V E+ +P +F
Sbjct: 225 NYDFLKNCGFQGRQIVDLVVGYPPILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFR 284
Query: 255 FSLEGRIKPRHALLVRHGVSLSLQQMLQVSD 285
L+ ++ RH LL + ++ SL +ML ++
Sbjct: 285 HGLKKKLVSRHKLLKKRNLNCSLSEMLDCNE 315
>Medtr4g070060.1 | transcription termination factor family protein |
HC | chr4:26370303-26365871 | 20130731
Length = 617
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 8/220 (3%)
Query: 70 AFRQNPTLRTCPLTT-LKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFL 128
AFR P L C + K + + L GI R M R+L + P + D + P + F
Sbjct: 367 AFR--PQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFF 424
Query: 129 LHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSLTCQTTL---LLV 185
++ + + K +++ P LL S+ +++RP + FL V ++ L LL
Sbjct: 425 -QDLGVRNDGIAKMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLG 483
Query: 186 SSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAE 245
S+ L V++ LG ++ MI P LL ++ + L PK + K M + +
Sbjct: 484 CSIVHKLEGNVKYYLSLGIRLQQLGEMIADFPMLLRYNI-DVLRPKYTYLRKTMVRTLKD 542
Query: 246 LKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSD 285
FP++FS+SLEGRI PRH +LV + +++ L+ ML +D
Sbjct: 543 AIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTD 582
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Query: 75 PTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRI 134
P L + L +K+ + MG+ G ++ P+ L ++ +D+L E +
Sbjct: 299 PKLLSYSLEEVKTRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMNRKVDYL-KEFGL 357
Query: 135 PYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFV--GPHSLTCQTTLLLVSSVEDTL 192
DV K + P+L+ S+EE+ +P + +L G G + ++ +E T+
Sbjct: 358 ESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTI 417
Query: 193 LPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFL 236
+PKV+F + LG ++ M+V+ P LLT S+ + P V F +
Sbjct: 418 VPKVKFFQDLGVRNDGIAKMLVKFPTLLTYSLYKKIRPVVIFLM 461
>Medtr5g068860.1 | transcription termination factor family protein |
HC | chr5:29165945-29163659 | 20130731
Length = 530
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 4/203 (1%)
Query: 92 LSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLV 151
L S+GIPR A+ R+++ P +L D + P + L E + + I + P ++
Sbjct: 286 LESLGIPRLAIARLIETQPYILGFDLDEKVKPNVKSL-EEFNVRETSLASIIAQYPDIIG 344
Query: 152 SSVEERLRPSLCFLRELGFVGPH--SLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEV 209
+ +E +L L + + L + +VS +L V+FL+ GF+ ++
Sbjct: 345 TDLEPKLADKRSVLNSVLDLDAEDFGLIIEKMPQVVSLSSTPMLKHVDFLKDCGFSVDQM 404
Query: 210 SNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLV 269
MIV P LL L++ + + ++F EM + +L FP +F++ LE IKPRH ++
Sbjct: 405 RKMIVGCPQLLALNI-DIMKLSFDYFQSEMERPLEDLVEFPAFFTYGLESTIKPRHNMVT 463
Query: 270 RHGVSLSLQQMLQVSDGGLEDRL 292
+ G+ SL ML SD E R+
Sbjct: 464 KKGLKCSLAWMLNCSDEKFEQRM 486
>Medtr1g115415.1 | transcription termination factor family protein |
HC | chr1:52109146-52107512 | 20130731
Length = 501
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 18/245 (7%)
Query: 59 YLHKLNINPEKAFRQNPTLRTCPL-------TTLKSVERCLSSMGIPRTAMGRILDMLPQ 111
YL + +NP P + P T +K + L ++G+P+ + R+L+
Sbjct: 217 YLVSIGVNPRDI---GPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKRILARMLEKRAY 273
Query: 112 LLTRDPHRDLYPILDFLLH-EVRIPY-PDVQKSILRCPRLLVSSVEERLRPSLCFLRELG 169
LL D + P +D L+ +R Y P V I + P ++ ++ +L F
Sbjct: 274 LLGYDLEETVKPNVDCLISFGLRKEYLPSV---IAQYPLIIGLPLKAKLSSQQYFFSLKL 330
Query: 170 FVGPHSLT--CQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNN 227
+ P + +VS ++ ++ VEFL G +V++M+++ P L+ L V
Sbjct: 331 KIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRV-EL 389
Query: 228 LAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGG 287
+ FF EM V EL FP+YF++SLE RIKPR+ L G+ SL ML SD
Sbjct: 390 MKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKTKGIKCSLNWMLNCSDQR 449
Query: 288 LEDRL 292
E+RL
Sbjct: 450 FEERL 454
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 153 SVEERLRPSLCFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNM 212
S E +R + F+++LG Q L+L SV ++P + +L +G +R ++
Sbjct: 102 STVEVMRERVEFIQKLGLTIDD--INQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEF 159
Query: 213 IVRSPALLTLSVVNNLAPKVEFF--LKEMNGDVA-ELKRFPQYFSFSLEGRIKPRHALLV 269
I P +L SV+ LAP ++F L D+ L+++P+ F LEG + A LV
Sbjct: 160 IKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLV 219
Query: 270 RHGVS 274
GV+
Sbjct: 220 SIGVN 224
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 9/197 (4%)
Query: 42 QPNTLPDRGLIFREKSLYLHKLNINPEKAFRQNPTLRTCPL-TTLKSVERCLSSMGIPRT 100
Q LP + RE+ ++ KL + + Q P + C + + V L +GI R+
Sbjct: 96 QDLELPSTVEVMRERVEFIQKLGLTIDD-INQYPLILGCSVRKNMIPVLGYLEKIGISRS 154
Query: 101 AMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRP 160
+G + PQ+L +L P++ F L + + D+ + + P LL +E +
Sbjct: 155 KLGEFIKNYPQVLHASVIVELAPVIKF-LRGLDVEKDDIGFVLQKYPELLGFKLEGTMST 213
Query: 161 SLCFLRELGF----VGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRS 216
S+ +L +G +GP + Q L V + P V++L LG + ++ M+ +
Sbjct: 214 SVAYLVSIGVNPRDIGP--MVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKRILARMLEKR 271
Query: 217 PALLTLSVVNNLAPKVE 233
LL + + P V+
Sbjct: 272 AYLLGYDLEETVKPNVD 288
>Medtr3g092710.1 | plastid transcriptionally active 15 protein | HC
| chr3:42360298-42362077 | 20130731
Length = 506
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 40/233 (17%)
Query: 90 RCLSSM-GIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPR 148
R L+++ G ++G++L+ P +L L + FL + + K +L P
Sbjct: 257 RVLTALSGGDEDSIGKVLNRFPIILNYSVEH-LEEHIKFLRCFADLDDQQIFKIVLVFPA 315
Query: 149 LLVSSVEERLRPSLCFLRELGFVGPH--SLTCQTTLLLVSSVEDTLLPKVEFLRGLGF-- 204
+ SS E +LRP + FL+E G L + L L S L K+ L +G+
Sbjct: 316 IFTSSRERKLRPRIQFLKECGLDADEIFKLLTKAALFLSISFRSNLAYKLGVLVKIGYKY 375
Query: 205 ------------TRLEVSNM--------------------IVRSPALLTLSVVNNLAPKV 232
TR+ NM + P +L + L K+
Sbjct: 376 RTKELAVAIAASTRISCENMQKMVSLFLNYGFSLEDIFAMSKKHPQILQYHHAS-LEKKM 434
Query: 233 EFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVR-HGVSLSLQQMLQVS 284
++ ++EMN D+ EL FP Y + L+ RIK R+ + G +S+ ++L VS
Sbjct: 435 DYMIEEMNRDIQELLDFPAYLGYKLDDRIKHRYEIKKDLRGEQMSINKLLTVS 487
>Medtr8g080990.1 | transcription termination factor family protein |
LC | chr8:34980913-34978858 | 20130731
Length = 378
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 162 LCFLRELGFVGP--HSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPAL 219
L + +++GF HS+ Q LL S V+ TL PKVEF + LGF + + I ++P +
Sbjct: 80 LNYFKQVGFSQAQIHSIIRQRLPLLFSDVDKTLRPKVEFFQQLGFQGSHLRDFISKNPTI 139
Query: 220 LTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLV 269
LT S+ L P VE K + K F Q S G + P++ L V
Sbjct: 140 LTASLNKKLIPSVEAIKKIAQNE----KDFIQVLSNC--GWLLPKYQLFV 183