Miyakogusa Predicted Gene

Lj1g3v1798720.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1798720.3 tr|A5AU42|A5AU42_VITVI Glutamate receptor
OS=Vitis vinifera GN=VITISV_040422 PE=3 SV=1,55.43,4e-19,no
description,NULL; GLUTAMATE RECEPTOR 2 PLANT,NULL; IONOTROPIC
GLUTAMATE RECEPTOR,NULL; Periplasmi,CUFF.27959.3
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105610.1 | glutamate receptor 3.2 | LC | chr3:48715609-48...   138   1e-33
Medtr3g105605.1 | glutamate receptor 2.2, putative | HC | chr3:4...    89   7e-19
Medtr0018s0240.1 | glutamate receptor 2, putative | LC | scaffol...    53   8e-08
Medtr2g015280.1 | receptor family ligand-binding region protein ...    52   9e-08

>Medtr3g105610.1 | glutamate receptor 3.2 | LC |
           chr3:48715609-48710293 | 20130731
          Length = 990

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 95/126 (75%), Gaps = 7/126 (5%)

Query: 4   NHQHPTKFVYFLIIFYSWSLSFIMNMGMAQ--RNETT-VVKVGGVIDLT--GMVGKMGLS 58
           N ++   F+ F++    W L  ++   +AQ  +NE+  VVKVG VID++  G VGK+GLS
Sbjct: 2   NIEYNPIFLKFMVC--CWCLVILLGGILAQITKNESNIVVKVGAVIDVSSNGTVGKIGLS 59

Query: 59  CINMSLSDFYHSHSHYNTRIQFSFRDSHGDVVTAAAQALELIQNEQVQAILGPVTTMEAN 118
           CINMSLSDFY SHSHY TRIQ   RDSH DVV+AAA AL+LI+NE+VQAI+GP+TT+E N
Sbjct: 60  CINMSLSDFYLSHSHYKTRIQLILRDSHKDVVSAAAHALDLIKNEKVQAIMGPITTIETN 119

Query: 119 FMIRLG 124
           F+I+LG
Sbjct: 120 FVIQLG 125


>Medtr3g105605.1 | glutamate receptor 2.2, putative | HC |
          chr3:48705636-48705317 | 20130731
          Length = 97

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 4/80 (5%)

Query: 21 WSLSFIMNMGMAQ-RNETT-VVKVGGVIDLTG--MVGKMGLSCINMSLSDFYHSHSHYNT 76
          W L  ++   +AQ +NE+  VVKVG VID++    VGK+GLSCINMSLSDFY SHSHY T
Sbjct: 15 WCLVNLLGGILAQSKNESNIVVKVGAVIDISSNETVGKIGLSCINMSLSDFYLSHSHYKT 74

Query: 77 RIQFSFRDSHGDVVTAAAQA 96
          RIQ   RDSH DVV AAA  
Sbjct: 75 RIQLIVRDSHRDVVAAAAHG 94


>Medtr0018s0240.1 | glutamate receptor 2, putative | LC |
           scaffold0018:146026-150912 | 20130731
          Length = 829

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 3/98 (3%)

Query: 20  SWSLSFIMNMGMAQRNETTVVKVGGVIDLTGMVGKMGLSCINMSLSDFYHSHSHYNTRIQ 79
           +WS+   +N  + QR  T  + +G V+DL  ++GK     I +++ +F ++ +  ++++ 
Sbjct: 21  AWSMVQRVNSLVPQR--TNNISIGAVLDLGSLMGKHQKIAIEIAVHEF-NNQTSSSSKLD 77

Query: 80  FSFRDSHGDVVTAAAQALELIQNEQVQAILGPVTTMEA 117
              +DSHGD     A  ++L Q+ Q+QAI+G  T  EA
Sbjct: 78  LQIKDSHGDSAQVIANVVDLSQSYQMQAIIGTTTHSEA 115


>Medtr2g015280.1 | receptor family ligand-binding region protein |
           HC | chr2:4495871-4491407 | 20130731
          Length = 939

 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 15  LIIFYSWSLSFIMNMGMAQRNETTVVKVGGVIDLTGMVGKMGLSCINMSLSDFYHSHSHY 74
           L+++ +  +S ++   +A R++TT   VG VID+    GK   + + ++   F +++SH 
Sbjct: 14  LLLWVTVIVSLLLLQCLANRSQTT--SVGVVIDVNSETGKQQRTAMQIAAQSF-NNYSH- 69

Query: 75  NTRIQFSFRDSHGDVVTAAAQALELIQNEQVQAILGPVTTMEANFMIRLG 124
           N  I   FRDS  + + AA+ A ELI  E+V+ I+G  T  EA+ M  +G
Sbjct: 70  NHNIILLFRDSGRNPLHAASTAEELITKEKVKVIIGTETWQEASIMADVG 119