Miyakogusa Predicted Gene
- Lj1g3v1788290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1788290.1 Non Characterized Hit- tr|B9RQX8|B9RQX8_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,63.41,4e-19,seg,NULL,CUFF.27939.1
(103 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g105210.1 | hypothetical protein | HC | chr3:48514920-4851... 96 6e-21
Medtr1g015650.1 | hypothetical protein | HC | chr1:3979166-39753... 67 3e-12
>Medtr3g105210.1 | hypothetical protein | HC |
chr3:48514920-48513766 | 20130731
Length = 200
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 66/96 (68%), Gaps = 5/96 (5%)
Query: 11 KDEEEQCSSS---SIGKNSDLSSETESGDMKNEAQSSYKCNGPLDMMDSLQQVLPIRRGI 67
+DE++QCSSS SIGK+SD +SE D NEA+S+Y + PL+MMDSLQQ LPIRRGI
Sbjct: 14 EDEDDQCSSSTTSSIGKDSD-ASECRDNDDDNEAESTYNYDEPLNMMDSLQQFLPIRRGI 72
Query: 68 SKFYDGKSKXXXXXXXXXXXXXXXKDIGKPDDAYTR 103
SKFYDGKSK KDI KP++AYTR
Sbjct: 73 SKFYDGKSK-SFMSLADAVSSPSAKDIAKPENAYTR 107
>Medtr1g015650.1 | hypothetical protein | HC | chr1:3979166-3975307
| 20130731
Length = 295
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 18 SSSSIGKNSDLSSETESGDMK----NEAQSSYKCNGPLDMMDSLQQVLPIRRGISKFYDG 73
SSSSIG+NSD + E + NEA+S Y G LD M++L++VLPIRR IS FY G
Sbjct: 84 SSSSIGRNSDDDDDDEVSSERSMDENEAESKYN-GGALDCMEALEEVLPIRRSISNFYSG 142
Query: 74 KSKXXXXXXXXXXXXXXXKDIGKPDDAYTR 103
KSK KDI KP++AYTR
Sbjct: 143 KSK-SFTSLADVVTTPSVKDIVKPENAYTR 171