Miyakogusa Predicted Gene

Lj1g3v1788290.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788290.1 Non Characterized Hit- tr|B9RQX8|B9RQX8_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,63.41,4e-19,seg,NULL,CUFF.27939.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105210.1 | hypothetical protein | HC | chr3:48514920-4851...    96   6e-21
Medtr1g015650.1 | hypothetical protein | HC | chr1:3979166-39753...    67   3e-12

>Medtr3g105210.1 | hypothetical protein | HC |
           chr3:48514920-48513766 | 20130731
          Length = 200

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 66/96 (68%), Gaps = 5/96 (5%)

Query: 11  KDEEEQCSSS---SIGKNSDLSSETESGDMKNEAQSSYKCNGPLDMMDSLQQVLPIRRGI 67
           +DE++QCSSS   SIGK+SD +SE    D  NEA+S+Y  + PL+MMDSLQQ LPIRRGI
Sbjct: 14  EDEDDQCSSSTTSSIGKDSD-ASECRDNDDDNEAESTYNYDEPLNMMDSLQQFLPIRRGI 72

Query: 68  SKFYDGKSKXXXXXXXXXXXXXXXKDIGKPDDAYTR 103
           SKFYDGKSK               KDI KP++AYTR
Sbjct: 73  SKFYDGKSK-SFMSLADAVSSPSAKDIAKPENAYTR 107


>Medtr1g015650.1 | hypothetical protein | HC | chr1:3979166-3975307
           | 20130731
          Length = 295

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 6/90 (6%)

Query: 18  SSSSIGKNSDLSSETESGDMK----NEAQSSYKCNGPLDMMDSLQQVLPIRRGISKFYDG 73
           SSSSIG+NSD   + E    +    NEA+S Y   G LD M++L++VLPIRR IS FY G
Sbjct: 84  SSSSIGRNSDDDDDDEVSSERSMDENEAESKYN-GGALDCMEALEEVLPIRRSISNFYSG 142

Query: 74  KSKXXXXXXXXXXXXXXXKDIGKPDDAYTR 103
           KSK               KDI KP++AYTR
Sbjct: 143 KSK-SFTSLADVVTTPSVKDIVKPENAYTR 171