Miyakogusa Predicted Gene

Lj1g3v1788200.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788200.2 tr|I1JK05|I1JK05_SOYBN Eukaryotic translation
initiation factor 3 subunit B OS=Glycine max PE=3 SV=1,83.93,0,TolB,
C-terminal domain,NULL; eIF2A,Translation initiation factor 2A, beta
propellor-like domain; SU,CUFF.27930.2
         (224 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105430.1 | eukaryotic translation initiation factor 3 sub...   320   7e-88
Medtr7g056267.1 | eukaryotic translation initiation factor 3 sub...   114   5e-26
Medtr4g087280.2 | eukaryotic translation initiation factor eIF2A...    59   3e-09
Medtr4g087280.1 | eukaryotic translation initiation factor eIF2A...    59   3e-09

>Medtr3g105430.1 | eukaryotic translation initiation factor 3
           subunit B | HC | chr3:48618144-48613776 | 20130731
          Length = 716

 Score =  320 bits (820), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 152/188 (80%), Positives = 165/188 (87%)

Query: 1   MRTAQKAGWVSKLTALKGKQANALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAE 60
           MRTAQ  G VSKLT LKGKQANALFWSPAGRFIV+AGLKGFNG LEFYNVDELETM   E
Sbjct: 495 MRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGLLEFYNVDELETMANTE 554

Query: 61  HFMTTDIEWDPTGRYVTTSVTSVHDVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPSF 120
           HF  TD+EWDPTGRYV T+VTSVH++ENGFNIWSF+GKHLYRI+KDHFFQF WR RP SF
Sbjct: 555 HFYATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPASF 614

Query: 121 LTPEKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEE 180
           LT EKEEEIA NLKKYSKKYEAEDQD S+LLSEQE+EK R+LKE+WD W NEWK +HEEE
Sbjct: 615 LTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRVLKEDWDKWANEWKLLHEEE 674

Query: 181 KLQREQHR 188
           KL+RE  R
Sbjct: 675 KLERENLR 682


>Medtr7g056267.1 | eukaryotic translation initiation factor 3
           subunit B, putative | HC | chr7:19725694-19726381 |
           20130731
          Length = 157

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 66/81 (81%)

Query: 108 FFQFSWRARPPSFLTPEKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWD 167
           F Q  WR RPPSFLTPEKEEEIA NLKKYSKKYEAE +D S+  SEQE+EK R+LKE+W+
Sbjct: 10  FIQLLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEIKDVSLQQSEQEREKRRILKEDWE 69

Query: 168 MWVNEWKWMHEEEKLQREQHR 188
            WVNEWK MHEEEKL+ +  R
Sbjct: 70  KWVNEWKLMHEEEKLESQNLR 90


>Medtr4g087280.2 | eukaryotic translation initiation factor
           eIF2A-like protein | HC | chr4:34234038-34228705 |
           20130731
          Length = 504

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 22  NALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAEHFMTTDIEWDPTGRYVTTSVT 81
           N + W+P G+F+ +AG     G + F++  E + + + +   +   EW P G Y  T+ T
Sbjct: 320 NTIRWNPKGKFLCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYFMTATT 379

Query: 82  SVH-DVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPS 119
           +    V+NG  I+ ++G   ++ M D  +Q  W+   PS
Sbjct: 380 APRLQVDNGIKIFHYNGSLYFKQMFDKLYQADWKPESPS 418


>Medtr4g087280.1 | eukaryotic translation initiation factor
           eIF2A-like protein | HC | chr4:34234169-34228705 |
           20130731
          Length = 516

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 22  NALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAEHFMTTDIEWDPTGRYVTTSVT 81
           N + W+P G+F+ +AG     G + F++  E + + + +   +   EW P G Y  T+ T
Sbjct: 320 NTIRWNPKGKFLCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYFMTATT 379

Query: 82  SVH-DVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPS 119
           +    V+NG  I+ ++G   ++ M D  +Q  W+   PS
Sbjct: 380 APRLQVDNGIKIFHYNGSLYFKQMFDKLYQADWKPESPS 418