Miyakogusa Predicted Gene

Lj1g3v1788170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788170.1 tr|A8IS75|A8IS75_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_206257 PE=4
SV=1,36.05,7e-18,seg,NULL,CUFF.27927.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105050.1 | hypothetical protein | HC | chr3:48442946-4843...   308   3e-84

>Medtr3g105050.1 | hypothetical protein | HC |
           chr3:48442946-48439376 | 20130731
          Length = 230

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/229 (74%), Positives = 190/229 (82%), Gaps = 6/229 (2%)

Query: 2   ASLVTPAHVSN-CKPLLCSTSKARPVRCALSP-PTWRESRRMXXXXXXXXXXXXXPNRA- 58
           +S+V+PAHVS   KPL C +S  R V+C LSP P+W+E RRM             PNRA 
Sbjct: 4   SSVVSPAHVSKYSKPLHCCSS--RKVKCELSPSPSWKEGRRMVSISLVLSHFLLFPNRAT 61

Query: 59  -EGGVFDKYVKRKKLDPLETYVPAVILTEFQFKDLEKTLEVDKPQFDLCRSLLRSGPAAS 117
            EG + DKYVKRKKL+PLETYVPAVILT+FQ KDLEKTLE + PQF LCRSLLRSGPAAS
Sbjct: 62  AEGSIMDKYVKRKKLEPLETYVPAVILTQFQIKDLEKTLEGNDPQFSLCRSLLRSGPAAS 121

Query: 118 LRVNIRAVAQYASDSGNGKTAMNNVDDCLRSLEELDSLFLNASRNDPAASVKSMKAKIST 177
           LRVNIRAVAQYASDSGNGKTA+NNVDDCLRSLE+LDSL L ASRNDP ASVKSM AK+S+
Sbjct: 122 LRVNIRAVAQYASDSGNGKTALNNVDDCLRSLEDLDSLLLRASRNDPDASVKSMMAKVSS 181

Query: 178 ALGALDSLLQTVPSDVLSKGKVIADSYRDQEDVETESLDPELKQLESVL 226
           AL ALDSLLQTVPSDVLSKG+VIADSY D+EDVETE+LDP LKQLES+L
Sbjct: 182 ALIALDSLLQTVPSDVLSKGRVIADSYLDREDVETENLDPGLKQLESIL 230