Miyakogusa Predicted Gene

Lj1g3v1788160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788160.1 tr|I7JWI7|I7JWI7_MARPO NDH subunit NdhU
OS=Marchantia polymorpha GN=ndhU PE=4 SV=1,34.05,2e-18,Chaperone
J-domain,Heat shock protein DnaJ, N-terminal; seg,NULL; no
description,Heat shock protein ,CUFF.27922.1
         (213 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g104980.1 | DnaJ heat shock amine-terminal domain protein,...   199   1e-51

>Medtr3g104980.1 | DnaJ heat shock amine-terminal domain protein,
           putative | HC | chr3:48394599-48395924 | 20130731
          Length = 211

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/216 (51%), Positives = 134/216 (62%), Gaps = 8/216 (3%)

Query: 1   MAVXXXXXXXICISGNNIVPVYQSPKLGFLSTNC-FHVK-PRRLCIRSSSDVSAETTDTE 58
           MA+       ICI  NNI       KLGF + N  F VK PR+LCIRSSS+ SA +T+ E
Sbjct: 1   MALSSTTTTTICIQSNNI-----PSKLGFSANNVVFSVKLPRKLCIRSSSENSAGSTEVE 55

Query: 59  VES-IEVPKEPPSLISALNVERALRGLPITDADHYGRLGIPRGYPSNKVAVAYNNKVXXX 117
            ES IE+PKE  SLIS LNVERALRG+PITDADHYGRLG+P+G P + V VAYNNKV   
Sbjct: 56  SESSIELPKESSSLISVLNVERALRGIPITDADHYGRLGLPKGCPYDMVPVAYNNKVREL 115

Query: 118 XXXXXXXXXXXXXXXXXXXXYTIMSSVEERRLYDWSLARTENTGRYNWPYEADIXXXXXX 177
                               YTIMSS +ERR+YDWSL+R +NT  Y WP+E D+      
Sbjct: 116 ESQGLEEDILNKKLELLRESYTIMSSPDERRMYDWSLSREDNTETYIWPFEVDVSVLQEG 175

Query: 178 XXXXXXXXDVGPTRVVGFVFLGWIVISVVLSISLNL 213
                   DVGPTR+VG+   GWI+++ VLSI LNL
Sbjct: 176 DPPPQEPEDVGPTRLVGYFLAGWILLAFVLSIGLNL 211