Miyakogusa Predicted Gene

Lj1g3v1788140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788140.1 Non Characterized Hit- tr|D7LA68|D7LA68_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,53.4,2e-19,PsbX,Photosystem II PsbX,CUFF.27929.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g104950.1 | ultraviolet-B-repressible protein | HC | chr3:...   160   2e-40
Medtr1g015290.1 | ultraviolet-B-repressible protein | HC | chr1:...   150   2e-37
Medtr4g125600.1 | ultraviolet-B-repressible protein | HC | chr4:...   112   8e-26
Medtr2g041260.1 | ultraviolet-B-repressible protein | HC | chr2:...    84   2e-17

>Medtr3g104950.1 | ultraviolet-B-repressible protein | HC |
           chr3:48386476-48387640 | 20130731
          Length = 120

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 99/123 (80%), Gaps = 3/123 (2%)

Query: 1   MASASVPMALSLSSVTHNKLNNPSSQSFFQPLPIRQNKTLFAKPSSKSKHGIHASLKEKA 60
           MAS SV  AL L S T NKL NPSS+SFF+PLPI Q K +     SKSK  I+ASLKEKA
Sbjct: 1   MASTSVATALPLGSATQNKLKNPSSESFFRPLPITQPKRI---TQSKSKVEINASLKEKA 57

Query: 61  VAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFDPV 120
           V  +TAAS+TASMVIP+VA+AAG+DL+PSL+NFLLSI AGG VLTAI  AVIGVSNFDPV
Sbjct: 58  VTAITAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPV 117

Query: 121 KRA 123
           KRA
Sbjct: 118 KRA 120


>Medtr1g015290.1 | ultraviolet-B-repressible protein | HC |
           chr1:3764474-3765010 | 20130731
          Length = 125

 Score =  150 bits (380), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 97/124 (78%), Gaps = 2/124 (1%)

Query: 1   MASASVPMALSLSSVTHNKLNNPSSQSFFQPLPIRQ-NKTLFAKPSSKSKH-GIHASLKE 58
           MASASV M+L L+  TH  L+N SS  F +PLP  Q  KTL  K +SKS   GI ASLK+
Sbjct: 1   MASASVSMSLPLTQATHKNLHNSSSTPFLKPLPFPQAKKTLVNKSTSKSNVVGIQASLKD 60

Query: 59  KAVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFD 118
           K V GLTA ++TASMV+P+VA+AAGND +PSLKNFLLSIAAGGVVLTAI  AV+GVSNFD
Sbjct: 61  KTVKGLTAFALTASMVLPDVAHAAGNDFSPSLKNFLLSIAAGGVVLTAILGAVVGVSNFD 120

Query: 119 PVKR 122
           PVKR
Sbjct: 121 PVKR 124


>Medtr4g125600.1 | ultraviolet-B-repressible protein | HC |
           chr4:52114050-52113366 | 20130731
          Length = 117

 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 91/124 (73%), Gaps = 10/124 (8%)

Query: 1   MASAS-VPMALSLSSVTHNKLNNPSSQSFFQ-PLPIRQNKTLFAKPSSKSKHGIHASLKE 58
           MAS S + MA+ L+  +  KL  P+SQ+F + PL ++ +K++ A     ++  + ASLKE
Sbjct: 1   MASTSTISMAVPLTCASK-KLEAPTSQAFLKAPLTLKPSKSVAA-----ARFVVKASLKE 54

Query: 59  KAVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFD 118
           K V GLTAA++TASM+ P+VA AA   ++PSLKNFLLSI +GGVV+TAI  AVIGVSNFD
Sbjct: 55  KIVTGLTAAALTASMISPDVAEAA--TVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFD 112

Query: 119 PVKR 122
           PVKR
Sbjct: 113 PVKR 116


>Medtr2g041260.1 | ultraviolet-B-repressible protein | HC |
           chr2:18099433-18100563 | 20130731
          Length = 120

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 89/125 (71%), Gaps = 9/125 (7%)

Query: 1   MASAS-VPMALSLSSVTHNKLNNPSSQSFFQPLPIRQNKTLFAKPSSKS--KHGIHASLK 57
           MAS S V +A+ L+  +  ++   SS++FF P P+R +K   A  S K   +  + AS+K
Sbjct: 1   MASTSAVSVAMPLTYTSQKRVVMNSSEAFFNPPPLRSSK---ATESLKRNGRFQVRASMK 57

Query: 58  EKAVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNF 117
           EK V+GLTAA++TASMV+P+VA AA   ++PSLKNFLLSIAAGGVV+  I  AVI VSNF
Sbjct: 58  EKVVSGLTAAALTASMVVPDVAEAA---VSPSLKNFLLSIAAGGVVVVVIIGAVIAVSNF 114

Query: 118 DPVKR 122
           DPVKR
Sbjct: 115 DPVKR 119