Miyakogusa Predicted Gene
- Lj1g3v1787670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1787670.1 Non Characterized Hit- tr|I3T3M7|I3T3M7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.8,0,no
description,Zinc finger, RING/FYVE/PHD-type; FYVE/PHD zinc finger,Zinc
finger, FYVE/PHD-type; ZF_,CUFF.27886.1
(251 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g015185.1 | PHD finger alfin-like protein | HC | chr1:3751... 325 2e-89
Medtr8g019520.2 | alfin-like transcription factor | HC | chr8:68... 314 4e-86
Medtr8g019520.1 | alfin-like transcription factor | HC | chr8:68... 314 5e-86
Medtr2g040990.1 | PHD finger alfin-like protein | HC | chr2:1796... 305 4e-83
Medtr4g134510.1 | PHD finger alfin-like protein | HC | chr4:5632... 288 4e-78
Medtr2g099500.1 | PHD finger alfin-like protein | HC | chr2:4265... 287 6e-78
Medtr4g015830.1 | PHD finger alfin-like protein | HC | chr4:4791... 246 2e-65
Medtr7g068590.1 | PHD finger alfin-like protein | HC | chr7:2513... 243 1e-64
Medtr1g015185.2 | PHD finger alfin-like protein | HC | chr1:3751... 230 8e-61
Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |... 93 3e-19
>Medtr1g015185.1 | PHD finger alfin-like protein | HC |
chr1:3751255-3746618 | 20130731
Length = 263
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/256 (64%), Positives = 177/256 (69%), Gaps = 11/256 (4%)
Query: 5 YNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXXXXXXXX 64
YNPRTVEEVFRDFKGRRAA++KALTTDVD F+ QCDPEKENLCLYGFPSE W
Sbjct: 8 YNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLPAEE 67
Query: 65 XXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKRLFGM 124
GINFARDGM+EKDWLSLVAVHSDAWL+SVAFYFGARFGFD+ DRKRLF M
Sbjct: 68 VPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNM 127
Query: 125 INDLPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXXXXXXXXXQVKYSKAMPSKXXXXXX 184
INDLPT+FE VTG +KQGKEK+ Q K+SK M
Sbjct: 128 INDLPTIFEAVTGSGRKQGKEKS-VSNNSSTKSKSNSKRSSEPQPKFSKPMAMAMQMQSK 186
Query: 185 ----------XXXXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQ 234
TLCGACGDSYAADEFWICCDICEKWFHGKCVKITPA+A+
Sbjct: 187 DEVEDEDGVGVDEEDEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPARAE 246
Query: 235 HIKHYKCPSCSNKRAR 250
HIK YKCP+CSNKRAR
Sbjct: 247 HIKQYKCPACSNKRAR 262
>Medtr8g019520.2 | alfin-like transcription factor | HC |
chr8:6883362-6878948 | 20130731
Length = 257
Score = 314 bits (805), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 159/256 (62%), Positives = 179/256 (69%), Gaps = 6/256 (2%)
Query: 1 MDER--YNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXX 58
MD R YNPRTVEEVFRDFKGRRA ++KALTTDV++F+ QCDPEKENLCLYGFPSE W
Sbjct: 1 MDARTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEV 60
Query: 59 XXXXXXXXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDR 118
GINFARDGM+EKDWLSLVAVHSD+WLI++A+YFGARFGFD+ DR
Sbjct: 61 NLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDR 120
Query: 119 KRLFGMINDLPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXX--XXXXXXXQVKYSKAMP 176
KRLF MINDLP+++EVVTG AKKQ KEK+ QVK +K +
Sbjct: 121 KRLFNMINDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPEPQVKQTKPLE 180
Query: 177 -SKXXXXXXXXXXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQH 235
K TLCGACG+ Y DEFWICCDICEKWFHGKCVKITPA+A+H
Sbjct: 181 LPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEH 240
Query: 236 IKHYKCPSCS-NKRAR 250
IK YKCPSCS NKRAR
Sbjct: 241 IKQYKCPSCSNNKRAR 256
>Medtr8g019520.1 | alfin-like transcription factor | HC |
chr8:6883372-6878935 | 20130731
Length = 256
Score = 314 bits (804), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/255 (62%), Positives = 179/255 (70%), Gaps = 5/255 (1%)
Query: 1 MDER--YNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXX 58
MD R YNPRTVEEVFRDFKGRRA ++KALTTDV++F+ QCDPEKENLCLYGFPSE W
Sbjct: 1 MDARTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEV 60
Query: 59 XXXXXXXXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDR 118
GINFARDGM+EKDWLSLVAVHSD+WLI++A+YFGARFGFD+ DR
Sbjct: 61 NLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDR 120
Query: 119 KRLFGMINDLPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXXXXXXX-XXQVKYSKAMP- 176
KRLF MINDLP+++EVVTG AKKQ KEK+ QVK +K +
Sbjct: 121 KRLFNMINDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPEPQVKQTKPLEL 180
Query: 177 SKXXXXXXXXXXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHI 236
K TLCGACG+ Y DEFWICCDICEKWFHGKCVKITPA+A+HI
Sbjct: 181 PKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHI 240
Query: 237 KHYKCPSCS-NKRAR 250
K YKCPSCS NKRAR
Sbjct: 241 KQYKCPSCSNNKRAR 255
>Medtr2g040990.1 | PHD finger alfin-like protein | HC |
chr2:17960762-17956593 | 20130731
Length = 253
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/248 (60%), Positives = 171/248 (68%), Gaps = 7/248 (2%)
Query: 5 YNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXXXXXXXX 64
++PRTVE VFRDFKGRRA ++KALTTDV+DF+ QCDPEKENL LYG+P E+W
Sbjct: 10 FDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGELWEVTLPAEE 69
Query: 65 XXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKRLFGM 124
GINFARDGM+EKDWLSLVAVHSD WL+SVAFYFGARFGFD+ DRKRLF +
Sbjct: 70 VPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRKRLFTL 129
Query: 125 INDLPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXXXXXXXXXQVKYSKAMPSKXXXXXX 184
INDLPT+FEVVTG AKKQ KEK KYSK P+K
Sbjct: 130 INDLPTIFEVVTGSAKKQTKEKPSVSSHNSIKSKSGSKARGSELAKYSKP-PAKEDDEGV 188
Query: 185 XXXXXXXXXXXTLCGACGDSY--AADEFWICCDICEKWFHGKCVKITPAKAQHIKHYKCP 242
C ACG+SY A+DEFWICCDICEKW+HGKCVKITPA+A+HIK YKCP
Sbjct: 189 DDEEEDQGE----CAACGESYVSASDEFWICCDICEKWYHGKCVKITPARAEHIKQYKCP 244
Query: 243 SCSNKRAR 250
+C+NKR R
Sbjct: 245 ACNNKRVR 252
>Medtr4g134510.1 | PHD finger alfin-like protein | HC |
chr4:56329915-56334966 | 20130731
Length = 256
Score = 288 bits (736), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/251 (56%), Positives = 160/251 (63%), Gaps = 1/251 (0%)
Query: 1 MDERYNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXXXX 60
M + PRTVEEVF D+KGRRA ++KALTTDV+ F+ CDPEKENLCLYGFP+E W
Sbjct: 4 MAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNL 63
Query: 61 XXXXXXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKR 120
GINFARDGM+EKDWLSLVAVHSD+WL++VAFYFGARFGF + DRKR
Sbjct: 64 PVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKR 123
Query: 121 LFGMINDLPTVFEVVTGMAKKQGKEKTXXXXXXXXX-XXXXXXXXXXXQVKYSKAMPSKX 179
LF MINDLPTVFE+ TG AK+ + T Q K K
Sbjct: 124 LFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVK 183
Query: 180 XXXXXXXXXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHY 239
CGACGD+Y DEFWICCD+CEKWFHGKCVKITPAKA+HIK Y
Sbjct: 184 EEVDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQY 243
Query: 240 KCPSCSNKRAR 250
KCP CS K+ R
Sbjct: 244 KCPGCSIKKPR 254
>Medtr2g099500.1 | PHD finger alfin-like protein | HC |
chr2:42658288-42662190 | 20130731
Length = 250
Score = 287 bits (735), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 145/245 (59%), Positives = 162/245 (66%), Gaps = 2/245 (0%)
Query: 8 RTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXXXXXXXXXXX 67
RTVE++F DFK RR I+KALT DV+DF+ QCDPEKENLCLYG +E W
Sbjct: 6 RTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPP 65
Query: 68 XXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKRLFGMIND 127
GINFARDGM+EKDWL+LVAVHSD WL+S+AFYFGARFGFD+ DRKRLF +IN+
Sbjct: 66 EIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINE 125
Query: 128 LPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXXXXXXX-XXQVKYSKAMPSKXXXXXXXX 186
LPTVFEVVTG AKKQ KEK+ Q + KA
Sbjct: 126 LPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALLPKDEEEELE 185
Query: 187 XXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHYKCPSC-S 245
CGACGDS ADEFWICCDICEKWFHGKCVKITPA+A+HIK YKCPSC S
Sbjct: 186 EQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSS 245
Query: 246 NKRAR 250
NKRAR
Sbjct: 246 NKRAR 250
>Medtr4g015830.1 | PHD finger alfin-like protein | HC |
chr4:4791805-4787747 | 20130731
Length = 240
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/250 (51%), Positives = 155/250 (62%), Gaps = 11/250 (4%)
Query: 1 MDERYNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXXXX 60
M+ +PRTVEE+F+DF RR IV+ALT DVD+F+ CDP+K+NLCLYG +E W
Sbjct: 1 MEMASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTL 60
Query: 61 XXXXXXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKR 120
GINFARDGM +DWLSLVAVHSD+WL+SVAFY GAR +R +RKR
Sbjct: 61 PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKR 118
Query: 121 LFGMINDLPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXXXXXXXXXQVKYSKAMPSKXX 180
LF +IN+LPTVFEVVT +K K+K QVK + +
Sbjct: 119 LFSLINELPTVFEVVTD--RKPIKDKP--TVDSGSKSRGSTKRSSDGQVKSNPKL----- 169
Query: 181 XXXXXXXXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHYK 240
TLCG+CG +Y ADEFWI CDICE+W+HGKCVKITPAKA+ IK YK
Sbjct: 170 VDDQGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYK 229
Query: 241 CPSCSNKRAR 250
CPSCS KR R
Sbjct: 230 CPSCSIKRGR 239
>Medtr7g068590.1 | PHD finger alfin-like protein | HC |
chr7:25139885-25143273 | 20130731
Length = 242
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/250 (49%), Positives = 153/250 (61%), Gaps = 9/250 (3%)
Query: 1 MDERYNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXXXX 60
M+ +PRTVEE+F+D+ RR A+V+ALT DVD+F+ CDP+K+NLCLYG +E W
Sbjct: 1 MEMASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTL 60
Query: 61 XXXXXXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKR 120
GINFARDGM +DWLSLVAVHSD+WL+SVAFY GAR +R +RKR
Sbjct: 61 PAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKR 118
Query: 121 LFGMINDLPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXXXXXXXXXQVKYSKAMPSKXX 180
LF +IN+LPTVFE+VT ++ + QVK + P
Sbjct: 119 LFSLINELPTVFEIVT---DRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFP---- 171
Query: 181 XXXXXXXXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHYK 240
TLCG+CG +Y ADEFWI CDICE+W+HGKCVKITPAKA+ IK YK
Sbjct: 172 VDDGYEEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYK 231
Query: 241 CPSCSNKRAR 250
CP CS +R R
Sbjct: 232 CPQCSIRRNR 241
>Medtr1g015185.2 | PHD finger alfin-like protein | HC |
chr1:3751249-3746646 | 20130731
Length = 206
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/143 (75%), Positives = 117/143 (81%)
Query: 5 YNPRTVEEVFRDFKGRRAAIVKALTTDVDDFFHQCDPEKENLCLYGFPSEVWXXXXXXXX 64
YNPRTVEEVFRDFKGRRAA++KALTTDVD F+ QCDPEKENLCLYGFPSE W
Sbjct: 8 YNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLPAEE 67
Query: 65 XXXXXXXXXXGINFARDGMEEKDWLSLVAVHSDAWLISVAFYFGARFGFDRMDRKRLFGM 124
GINFARDGM+EKDWLSLVAVHSDAWL+SVAFYFGARFGFD+ DRKRLF M
Sbjct: 68 VPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNM 127
Query: 125 INDLPTVFEVVTGMAKKQGKEKT 147
INDLPT+FE VTG +KQGKEK+
Sbjct: 128 INDLPTIFEAVTGSGRKQGKEKS 150
>Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |
20130731
Length = 152
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 118 RKRLFGMINDLPTVFEVVTGMAKKQGKEKTXXXXXXXXXXXXXXXXXXXXQVKYSKAMPS 177
RKRLF INDLPT+FEVVTG AKKQ KEK KYSK P+
Sbjct: 29 RKRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKP-PA 87
Query: 178 KXXXXXXXXXXXXXXXXXTLCGACGDSYAADEFWICCDICEKWFHGKCV-KITPAKAQHI 236
K C ACG++Y + W+HGKCV KITPA+A+ I
Sbjct: 88 KEDDEEVDDEEEYQGE----CTACGENYVS------------WYHGKCVKKITPAQAEQI 131
Query: 237 KHYKCPSCSNKRAR 250
K Y+CP+C+NKR R
Sbjct: 132 KQYRCPTCNNKRVR 145