Miyakogusa Predicted Gene

Lj1g3v1787550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1787550.1 tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein
OS=Oryza sativa subsp. japonica GN=OJ1439_F07.25 PE=4
SV,46.88,1e-18,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; RNA-binding ,CUFF.27882.1
         (229 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   278   3e-75
Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein...   223   8e-59
Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein...   175   4e-44
Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein...   175   4e-44
Medtr3g104670.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   130   1e-30
Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   114   8e-26
Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   112   4e-25
Medtr3g091860.1 | RNA-binding protein with multiple splicing pro...   110   1e-24
Medtr3g091860.2 | RNA-binding protein with multiple splicing pro...   110   1e-24
Medtr3g091860.3 | RNA-binding protein with multiple splicing pro...    91   9e-19
Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein...    59   3e-09
Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC | chr5...    57   1e-08
Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC | chr5...    57   1e-08
Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative...    56   3e-08
Medtr7g108715.1 | small nuclear ribonucleoprotein | HC | chr7:44...    54   1e-07
Medtr4g084990.2 | U1 small nuclear ribonucleoprotein | HC | chr4...    54   2e-07
Medtr4g084990.1 | U1 small nuclear ribonucleoprotein | HC | chr4...    54   2e-07

>Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:48246099-48241678 | 20130731
          Length = 229

 Score =  278 bits (711), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/219 (66%), Positives = 168/219 (76%), Gaps = 13/219 (5%)

Query: 16  ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDD 75
           +DGAS ARSS+AGYIPSE  SLASP P+   S +  G G+DYL  D++L R+ PY  VDD
Sbjct: 14  SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69

Query: 76  AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
              SRV SE N   Y+PL+D  L TKRD  LGV     +P  ++ER I K+N + L    
Sbjct: 70  TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129

Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKC 186
           A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRRSGDKAM+ CFVEF + KC
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKC 189

Query: 187 ALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 225
           ALTAMEALQGYKFDDKKPDS TLKI+FAHFPFRPP D+G
Sbjct: 190 ALTAMEALQGYKFDDKKPDSPTLKIKFAHFPFRPPTDDG 228


>Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:48246099-48244267 | 20130731
          Length = 215

 Score =  223 bits (569), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 142/193 (73%), Gaps = 13/193 (6%)

Query: 16  ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDD 75
           +DGAS ARSS+AGYIPSE  SLASP P+   S +  G G+DYL  D++L R+ PY  VDD
Sbjct: 14  SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69

Query: 76  AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
              SRV SE N   Y+PL+D  L TKRD  LGV     +P  ++ER I K+N + L    
Sbjct: 70  TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129

Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKC 186
           A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRRSGDKAM+ CFVEF + KC
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKC 189

Query: 187 ALTAMEALQGYKF 199
           ALTAMEALQ  K+
Sbjct: 190 ALTAMEALQVSKY 202


>Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:48246099-48244805 | 20130731
          Length = 178

 Score =  175 bits (443), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 116/162 (71%), Gaps = 13/162 (8%)

Query: 16  ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDD 75
           +DGAS ARSS+AGYIPSE  SLASP P+   S +  G G+DYL  D++L R+ PY  VDD
Sbjct: 14  SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69

Query: 76  AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
              SRV SE N   Y+PL+D  L TKRD  LGV     +P  ++ER I K+N + L    
Sbjct: 70  TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129

Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRR 168
           A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRR
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRR 171


>Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:48246099-48244805 | 20130731
          Length = 178

 Score =  175 bits (443), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 116/162 (71%), Gaps = 13/162 (8%)

Query: 16  ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDD 75
           +DGAS ARSS+AGYIPSE  SLASP P+   S +  G G+DYL  D++L R+ PY  VDD
Sbjct: 14  SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPYG-VDD 69

Query: 76  AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
              SRV SE N   Y+PL+D  L TKRD  LGV     +P  ++ER I K+N + L    
Sbjct: 70  TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129

Query: 127 ADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRR 168
           A+SN+LFV GLP+DCTRREVGHLFRPFIGYKDI+VVHKEPRR
Sbjct: 130 AESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRR 171


>Medtr3g104670.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:48246099-48245200 | 20130731
          Length = 173

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 96/144 (66%), Gaps = 13/144 (9%)

Query: 16  ADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDD 75
           +DGAS ARSS+AGYIPSE  SLASP P+   S +  G G+DYL  D++L R+ PY  VDD
Sbjct: 14  SDGASFARSSYAGYIPSEAPSLASPLPK---STDFPGYGSDYLNKDVSLFRMEPY-GVDD 69

Query: 76  AVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGV-----NPDVSSERPIPKANREGL---- 126
              SRV SE N   Y+PL+D  L TKRD  LGV     +P  ++ER I K+N + L    
Sbjct: 70  TRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSA 129

Query: 127 ADSNVLFVDGLPRDCTRREVGHLF 150
           A+SN+LFV GLP+DCTRREVG + 
Sbjct: 130 AESNILFVGGLPKDCTRREVGRIL 153


>Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr6:12131803-12138897 | 20130731
          Length = 261

 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 18/129 (13%)

Query: 89  GYSPLDDPVLRTKRDTSLGVNPDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGH 148
           G+ P  DPV R   + +L + PD S                  L+++GLP DCTRREV H
Sbjct: 127 GFQPPMDPVSRHGPEPAL-LPPDASP----------------TLYIEGLPSDCTRREVAH 169

Query: 149 LFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRT 208
           +FRPF+GY+++R+V KE +  GD  ++LCFV+F +  CA TA+ ALQGYK D+  P+S  
Sbjct: 170 IFRPFVGYREVRLVSKEAKHRGDP-LILCFVDFANPACAATALSALQGYKVDEINPESSH 228

Query: 209 LKIQFAHFP 217
           L++QF+ +P
Sbjct: 229 LRLQFSRYP 237


>Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:44752922-44747555 | 20130731
          Length = 252

 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 103/189 (54%), Gaps = 12/189 (6%)

Query: 37  LASPYPRFSNSAELRGI--GADYLQNDINLSR-VG--PYSSVDDAVSSRVLSEPNIKGYS 91
           L S Y RF  SA L     G   +   +  +R VG  P  S+ D  +   LS   + G  
Sbjct: 59  LGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLS--GVGGGP 116

Query: 92  PLDDPVLRTKRDTSLGVN-PDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGHLF 150
            L     R  RD + G   P  +  RP P+        S+ L+V+GLP D T+REV H+F
Sbjct: 117 DLS----RNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIF 172

Query: 151 RPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLK 210
           RPF+GY+++R+V KE +  G   ++LCFV+F +  CA TA+ ALQGYK D+  P+S  L+
Sbjct: 173 RPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLR 232

Query: 211 IQFAHFPFR 219
           +QF+  P R
Sbjct: 233 LQFSRSPGR 241


>Medtr3g091860.1 | RNA-binding protein with multiple splicing
           protein | HC | chr3:41912150-41919016 | 20130731
          Length = 228

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 66/91 (72%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
           +N LFV+GLP +CTRREV H+FRPF+GYK++R+V KE R+ G   ++LCFV+F     A 
Sbjct: 129 TNTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAA 188

Query: 189 TAMEALQGYKFDDKKPDSRTLKIQFAHFPFR 219
           TAM+AL GYKFD+   +S  L+ QFA  P R
Sbjct: 189 TAMDALHGYKFDELDRNSVNLRFQFARNPGR 219


>Medtr3g091860.2 | RNA-binding protein with multiple splicing
           protein | HC | chr3:41912150-41919016 | 20130731
          Length = 228

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 66/91 (72%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
           +N LFV+GLP +CTRREV H+FRPF+GYK++R+V KE R+ G   ++LCFV+F     A 
Sbjct: 129 TNTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAA 188

Query: 189 TAMEALQGYKFDDKKPDSRTLKIQFAHFPFR 219
           TAM+AL GYKFD+   +S  L+ QFA  P R
Sbjct: 189 TAMDALHGYKFDELDRNSVNLRFQFARNPGR 219


>Medtr3g091860.3 | RNA-binding protein with multiple splicing
           protein | HC | chr3:41912150-41918988 | 20130731
          Length = 243

 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 52/68 (76%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
           +N LFV+GLP +CTRREV H+FRPF+GYK++R+V KE R+ G   ++LCFV+F     A 
Sbjct: 129 TNTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAA 188

Query: 189 TAMEALQG 196
           TAM+AL G
Sbjct: 189 TAMDALHG 196


>Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:44752913-44747593 | 20130731
          Length = 195

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 12/138 (8%)

Query: 37  LASPYPRFSNSAELRGI--GADYLQNDINLSR-VG--PYSSVDDAVSSRVLSEPNIKGYS 91
           L S Y RF  SA L     G   +   +  +R VG  P  S+ D  +   LS   + G  
Sbjct: 59  LGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLS--GVGGGP 116

Query: 92  PLDDPVLRTKRDTSLGVN-PDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGHLF 150
            L     R  RD + G   P  +  RP P+        S+ L+V+GLP D T+REV H+F
Sbjct: 117 DLS----RNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIF 172

Query: 151 RPFIGYKDIRVVHKEPRR 168
           RPF+GY+++R+V KE + 
Sbjct: 173 RPFVGYREVRLVAKESKH 190


>Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC |
           chr5:31637698-31631234 | 20130731
          Length = 233

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 8/82 (9%)

Query: 123 REGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFD 182
           +E  A +N+LF++ LP + T R +  LF  + G+K++R++  +P         + FV+F+
Sbjct: 152 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--------IAFVDFE 203

Query: 183 DSKCALTAMEALQGYKFDDKKP 204
           D   +  AM+ALQG+K   + P
Sbjct: 204 DDGQSSMAMQALQGFKITPQNP 225


>Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC |
           chr5:31637698-31631271 | 20130731
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 8/82 (9%)

Query: 123 REGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFD 182
           +E  A +N+LF++ LP + T R +  LF  + G+K++R++  +P         + FV+F+
Sbjct: 153 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--------IAFVDFE 204

Query: 183 DSKCALTAMEALQGYKFDDKKP 204
           D   +  AM+ALQG+K   + P
Sbjct: 205 DDGQSSMAMQALQGFKITPQNP 226


>Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative |
           LC | chr1:24534556-24533368 | 20130731
          Length = 279

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 12/92 (13%)

Query: 123 REGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFD 182
           +E  A +N+LF++ LP + T R +  LF  + G+K++R++  +P         + FV+F+
Sbjct: 198 QEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG--------IAFVDFE 249

Query: 183 DSKCALTAMEALQGYKFDDKKPDSRTLKIQFA 214
           D   +  AM+ALQG+K   + P    + I FA
Sbjct: 250 DEGQSSMAMQALQGFKITPQNP----MIINFA 277


>Medtr7g108715.1 | small nuclear ribonucleoprotein | HC |
           chr7:44399841-44398655 | 20130731
          Length = 161

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
           +N+LF+  LP + T   +  LF  + G+K++R+V  +P         + FVE+ D   + 
Sbjct: 86  NNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPG--------IAFVEYGDEMQST 137

Query: 189 TAMEALQGYKFDDKKP 204
            AM+ALQG+K   + P
Sbjct: 138 VAMQALQGFKIAPQNP 153


>Medtr4g084990.2 | U1 small nuclear ribonucleoprotein | HC |
           chr4:33189422-33193785 | 20130731
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
           +N+LF+  LP + T   +  LF  + G+K++R+V  +P         + FVE+ D   + 
Sbjct: 170 NNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPG--------IAFVEYGDEMQST 221

Query: 189 TAMEALQGYKFDDKKP 204
            AM+ALQG+K   + P
Sbjct: 222 MAMQALQGFKIAPQNP 237


>Medtr4g084990.1 | U1 small nuclear ribonucleoprotein | HC |
           chr4:33189286-33193785 | 20130731
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 8/76 (10%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
           +N+LF+  LP + T   +  LF  + G+K++R+V  +P         + FVE+ D   + 
Sbjct: 169 NNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPG--------IAFVEYGDEMQST 220

Query: 189 TAMEALQGYKFDDKKP 204
            AM+ALQG+K   + P
Sbjct: 221 MAMQALQGFKIAPQNP 236