Miyakogusa Predicted Gene
- Lj1g3v1785860.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1785860.1 Non Characterized Hit- tr|G1RFD5|G1RFD5_NOMLE
Uncharacterized protein OS=Nomascus leucogenys
GN=FUBP,36.93,3e-18,seg,NULL; KH_1,K Homology domain, type 1; KH
DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN CONTAINING RN,CUFF.27848.1
(597 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803... 563 e-160
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804... 559 e-159
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 525 e-149
Medtr5g008420.1 | RNA-binding KH domain protein | HC | chr5:1773... 207 2e-53
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 67 4e-11
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 67 4e-11
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 65 2e-10
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 63 8e-10
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 63 8e-10
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 63 8e-10
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 63 8e-10
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 61 3e-09
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 61 3e-09
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 55 2e-07
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 55 2e-07
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 55 2e-07
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 55 2e-07
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 55 2e-07
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 52 2e-06
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 51 3e-06
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 51 3e-06
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 51 3e-06
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 50 6e-06
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 50 8e-06
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 50 8e-06
>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
chr3:48031833-48027169 | 20130731
Length = 605
Score = 563 bits (1451), Expect = e-160, Method: Compositional matrix adjust.
Identities = 363/623 (58%), Positives = 400/623 (64%), Gaps = 63/623 (10%)
Query: 1 MAEEAHYAAPASESLKRKYDEPPTHRPTGFSSPHSTVSDIEL----AKQKAQEVAARLFS 56
MAEEA YA +LKRKYD+ PT +DIEL AKQ+AQEVAARL S
Sbjct: 1 MAEEAQYA-----TLKRKYDDQPT------------ATDIELEVANAKQRAQEVAARLLS 43
Query: 57 --GAXXXXXXXXXXXXXNAAPPSSFDSIDLKAQYPVS--TYQTSSKKIDIPSGRVGVIIG 112
GA N AP S FDS DLK QY +Y SSKKI+IP+GRVGV+IG
Sbjct: 44 VTGAPPLSYDPKRTKSDNGAPHSGFDSYDLKPQYSQQGGSY-GSSKKIEIPNGRVGVLIG 102
Query: 113 KGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAEKLINEVLAEAESG 172
KGGETIK LQ++SGAKIQVTRDMDADPNS R+VELMG+P+A++ AEKLINEVLAEAE+G
Sbjct: 103 KGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAG 162
Query: 173 GSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETIKSMQAESGARIQVIPLHLPPG 232
SG RR+ QSG DEF MQIPNNKVGLIIGKGGETIKSMQA +GARIQVIPLH PPG
Sbjct: 163 ASGGGTRRMVAQSG-GDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPG 221
Query: 233 DPSTERTLKIDGSPEQIESAKQLVNQIINGENRPR---NSGGYSQQGYXXXXXXXXXXXX 289
D STERTLKIDG+P+QIESAKQLVNQI+ GENR R NSGGY+QQGY
Sbjct: 222 DTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPP 281
Query: 290 XXXXXXGYGYMQPGAYSGQAPQYNMXXXXXXXXXXXXXXXXSTNWDQSTAPPNQPT--AG 347
GYGY QPG+YSG +PQYNM S NWDQSTAP +Q + A
Sbjct: 282 APVQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSANWDQSTAPSHQQSTHAS 341
Query: 348 XXXXXXXXXXXXXXXXXXXXXXDGSTYNYSQPPSSGYNHPGQGYGQDGYSAYNAPPQSGY 407
DGS Y+YSQPPSSGY+ PGQGYGQ+ Y AYNA QSGY
Sbjct: 342 GYDYYNQQPQQQQNPGGPPQPADGSGYSYSQPPSSGYSQPGQGYGQESYGAYNAQQQSGY 401
Query: 408 GQPPTYDQQQGYGSAPSYGS-SNPAQEGNTSSYGAQGDSSQAPSVQPSTAAAQGYATNQQ 466
GQP TYDQQQGYGSAPSYGS SNP QEG+TS+YG+Q D+SQ + QP+T A QGYATNQ
Sbjct: 402 GQPQTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADTSQ--TSQPTTVAQQGYATNQ- 458
Query: 467 PNSTSQQGYGAPPPTSQAAXXXXXXXXXXXXXXX--XVKPSGTPPVYGQSQSPSTAGGYX 524
T Q GY A PT+QAA KPS PPVYGQSQSPSTAGGY
Sbjct: 459 -PETPQPGY-AVAPTTQAAYGSQPQSGYGPSYGAPPSQKPSANPPVYGQSQSPSTAGGYG 516
Query: 525 XXXXXXXXXXXXXXXXXDQKAPASGYG--------VAAQPGYGPQSYGAPQG---SYGQA 573
+AP SGY QPGYGPQSYGAPQG YGQ
Sbjct: 517 HSAYPSS------------QAPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPGYGQT 564
Query: 574 PPSYGNSSYGAGYAQTPAYASDG 596
PPSYGNSSYG YAQ PAYASDG
Sbjct: 565 PPSYGNSSYGGSYAQAPAYASDG 587
>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
chr3:48040831-48036380 | 20130731
Length = 605
Score = 559 bits (1441), Expect = e-159, Method: Compositional matrix adjust.
Identities = 362/623 (58%), Positives = 398/623 (63%), Gaps = 63/623 (10%)
Query: 1 MAEEAHYAAPASESLKRKYDEPPTHRPTGFSSPHSTVSDIEL----AKQKAQEVAARLFS 56
MAEEA YA +LKRKYD+ PT +DIEL AKQ+AQEVAARL S
Sbjct: 1 MAEEAQYA-----TLKRKYDDQPT------------ATDIELEVANAKQRAQEVAARLLS 43
Query: 57 --GAXXXXXXXXXXXXXNAAPPSSFDSIDLKAQYPVS--TYQTSSKKIDIPSGRVGVIIG 112
GA N AP S FDS DLK QY +Y SSKKI+IP+GRVGV+IG
Sbjct: 44 VTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSY-GSSKKIEIPNGRVGVLIG 102
Query: 113 KGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAEKLINEVLAEAESG 172
KGGETIK LQ++SGAKIQVTRDMDADPNS R+VELMG+P+A++ AEKLINEVLAEAE+G
Sbjct: 103 KGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAG 162
Query: 173 GSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETIKSMQAESGARIQVIPLHLPPG 232
S RR+ QSG DEF MQIPNNKVGLIIGKGGETIK MQA +GARIQVIPLH PPG
Sbjct: 163 ASVGGTRRMVAQSG-GDEFVMQIPNNKVGLIIGKGGETIKGMQASTGARIQVIPLHPPPG 221
Query: 233 DPSTERTLKIDGSPEQIESAKQLVNQIINGENRPR---NSGGYSQQGYXXXXXXXXXXXX 289
D STERTLKIDG+P+QIESAKQLVNQI+ GENR R NSGGY+QQGY
Sbjct: 222 DTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPA 281
Query: 290 XXXXXXGYGYMQPGAYSGQAPQYNMXXXXXXXXXXXXXXXXSTNWDQSTAPPNQPT--AG 347
GYGY QPG+YSG +PQYN S NWDQSTAP +Q + A
Sbjct: 282 APVQQAGYGYGQPGSYSGPSPQYNTPQPPYTGYPPQQPGGYSANWDQSTAPSHQQSTHAS 341
Query: 348 XXXXXXXXXXXXXXXXXXXXXXDGSTYNYSQPPSSGYNHPGQGYGQDGYSAYNAPPQSGY 407
DGS Y+YSQPPSSGY+ PGQGYGQ+ Y AYNA QSGY
Sbjct: 342 GYDYYNQQPQQQQNPGGPSQPADGSAYSYSQPPSSGYSQPGQGYGQESYGAYNAQQQSGY 401
Query: 408 GQPPTYDQQQGYGSAPSYGS-SNPAQEGNTSSYGAQGDSSQAPSVQPSTAAAQGYATNQQ 466
GQP TYDQQQGYGSAPSYGS SNP QEG+TS+YG+Q D+SQ + QP+T A QGYATNQQ
Sbjct: 402 GQPQTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADTSQ--TSQPTTVAQQGYATNQQ 459
Query: 467 PNSTSQQGYGAPPPTSQAAXXXXXXXXXXXXXXX--XVKPSGTPPVYGQSQSPSTAGGYX 524
T Q GY A PTSQA KPS PPVYGQSQSPSTA GY
Sbjct: 460 --GTPQPGY-AVAPTSQATYGSQPQSGYGTGYGAPPSQKPSANPPVYGQSQSPSTAAGYG 516
Query: 525 XXXXXXXXXXXXXXXXXDQKAPASGYG--------VAAQPGYGPQSYGAPQG---SYGQA 573
+AP SGY QPGYGPQSYGAPQG SYGQ
Sbjct: 517 QSAYPSS------------QAPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPSYGQT 564
Query: 574 PPSYGNSSYGAGYAQTPAYASDG 596
P SYGNSSYGAGYAQ PAYASDG
Sbjct: 565 PASYGNSSYGAGYAQAPAYASDG 587
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 525 bits (1352), Expect = e-149, Method: Compositional matrix adjust.
Identities = 338/629 (53%), Positives = 382/629 (60%), Gaps = 65/629 (10%)
Query: 1 MAEEAHYAAPASESLKRKYDE--PPTHRPTGFSS----------PHSTVSDIELAKQKAQ 48
MA+E+ Y + SLKRKYDE PP R TGFS P +D EL KQ+AQ
Sbjct: 1 MADESQYDS-TPPSLKRKYDEQPPPHSRTTGFSDGPPPPSYNNVPPPATADFELIKQRAQ 59
Query: 49 EVAARLFSGAXXXXXXXXXXXXXNAAPPSSFDSIDLKAQY------PVSTYQTSSKKIDI 102
+VAARL SGA N PPS +DS DLK+QY P ++Q SSKKI+I
Sbjct: 60 QVAARLLSGAAAPSDVVKRTKFDNG-PPSPYDSSDLKSQYAAPMSIPSYSHQGSSKKIEI 118
Query: 103 PSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAEKLI 162
P+GRVGVIIGKGGETIK LQL+SGAKIQVTRDMDADPNSPNRLVEL G+ +AIA AEKLI
Sbjct: 119 PNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLI 178
Query: 163 NEVLAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETIKSMQAESGARI 222
EVLAEAESGG+G++ RR+TGQ G ADEFSM+IPNNKVGLIIGKGGETIKSMQA +GARI
Sbjct: 179 KEVLAEAESGGNGLVTRRMTGQ-GGADEFSMKIPNNKVGLIIGKGGETIKSMQATTGARI 237
Query: 223 QVIPLHLPPGDPSTERTLKIDGSPEQIESAKQLVNQIINGENRPRN---SGGYSQQGYXX 279
QVIPLHLPPGD STERTLKI+G+ EQIESAKQLV+ I++GENR RN SGGYSQQGY
Sbjct: 238 QVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENRLRNPSMSGGYSQQGY-Q 296
Query: 280 XXXXXXXXXXXXXXXXGYGYMQPGAYSGQAPQYNMXXXXXXXXXXXXXXXXSTNWDQSTA 339
GYGY QPGAY G PQYN+ STNWDQSTA
Sbjct: 297 ARPPSSWAPPAASQQPGYGYAQPGAYPGPTPQYNVPQQAYAGYPPHSAGGYSTNWDQSTA 356
Query: 340 PPNQPTAGXXXXXXXXXXXXXXXXXXXXXXDGSTYNYSQPPSSGYNHPGQGYGQDGYSAY 399
Q T DG+ YNYSQPPS+GYN PGQGY QDGY AY
Sbjct: 357 TTQQST---YDYYNQQPQQPQNPGGPAPPADGTAYNYSQPPSAGYNQPGQGYSQDGYGAY 413
Query: 400 NAPPQSGYGQPPTYDQQQGYGSAPSYGSSNPAQEGNTSS-YGA--QGDSSQAPSVQPSTA 456
PPQSGY QP +YDQQQGYGS AQEG T++ YG+ QGD++Q P VQPS
Sbjct: 414 QQPPQSGYAQPTSYDQQQGYGS---------AQEGQTTTNYGSQGQGDATQVPPVQPSQ- 463
Query: 457 AAQGYATNQQPN---------STSQQGYGAPPPTSQAAXXXXXXXXXXXXXXXXVKPSGT 507
QGY ++QQP+ +Q YG PPTSQ A KPSGT
Sbjct: 464 --QGYGSSQQPSPNAAKYPPQGAAQPSYGV-PPTSQTAYGSQPQTQSGYGPPQTQKPSGT 520
Query: 508 PPVYGQSQSPSTAGGYXXXXXXXXXXXXXXXXXXDQKAPASGYGVAAQPGYGPQSYGAPQ 567
PP YGQSQSP+ AGGY +QPG
Sbjct: 521 PPAYGQSQSPNAAGGYGQPGYPPSQPPPSGYSQPGYPPSQPPPSGYSQPG---------- 570
Query: 568 GSYGQAPPSYGNSSYGAGYAQTPAYASDG 596
YGQAP SY + SYGAGY Q PAY++DG
Sbjct: 571 --YGQAPQSYNSGSYGAGYPQAPAYSADG 597
>Medtr5g008420.1 | RNA-binding KH domain protein | HC |
chr5:1773973-1764791 | 20130731
Length = 780
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 144/192 (75%), Gaps = 4/192 (2%)
Query: 89 PVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVEL 148
P+S T+++KI++PS +VGV+IGK G+TI+ LQ SGAKIQ+TRD DADP+S R VEL
Sbjct: 178 PISGSDTTTRKIEVPSNKVGVLIGKSGDTIRYLQYNSGAKIQITRDADADPHSSTRPVEL 237
Query: 149 MGSPEAIADAEKLINEVLAEAESGGS-GMIGRRLTGQSG--SADEFSMQIPNNKVGLIIG 205
+G+ E+I AEKL+N V+AEA++GGS ++ R L+ +D+ +Q+PN KVGLIIG
Sbjct: 238 IGTLESIDKAEKLMNAVIAEADAGGSPALVARGLSPAQAIVGSDQIQIQVPNEKVGLIIG 297
Query: 206 KGGETIKSMQAESGARIQVIPLHLPPGDPSTERTLKIDGSPEQIESAKQLVNQIINGENR 265
KGGETIKS+Q ++GARIQ+IP HLP GD S ERT+++ G QIE A++++ ++++ R
Sbjct: 298 KGGETIKSLQTKTGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEIAQEMIKEVLSQPIR 357
Query: 266 PRNSGGYSQQGY 277
+SGG+ QQ Y
Sbjct: 358 -SSSGGFGQQAY 368
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 33/165 (20%)
Query: 108 GVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAEKLINEVLA 167
G +IGKGG TI Q +SGA+IQ++R+ + P + +R++ + G+ INEVL
Sbjct: 48 GSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGA----------INEVLR 97
Query: 168 EAESGGSGMIGRRLTGQSGSADE--------FSMQIPNNKVGLIIGKGGETIKSMQAESG 219
E +I +L + S D+ + +PN G IIGKGG TI+S ES
Sbjct: 98 AVE-----LILSKLLSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQ 152
Query: 220 ARIQVIPLHLPPGDPS----TERTLKIDGS-PEQIESAKQLVNQI 259
A I++ P D S +R + + G+ EQ+ +V+++
Sbjct: 153 AGIKI-----SPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 33/165 (20%)
Query: 108 GVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAEKLINEVLA 167
G +IGKGG TI Q +SGA+IQ++R+ + P + +R++ + G+ INEVL
Sbjct: 48 GSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGA----------INEVLR 97
Query: 168 EAESGGSGMIGRRLTGQSGSADE--------FSMQIPNNKVGLIIGKGGETIKSMQAESG 219
E +I +L + S D+ + +PN G IIGKGG TI+S ES
Sbjct: 98 AVE-----LILSKLLSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQ 152
Query: 220 ARIQVIPLHLPPGDPS----TERTLKIDGS-PEQIESAKQLVNQI 259
A I++ P D S +R + + G+ EQ+ +V+++
Sbjct: 153 AGIKI-----SPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 41/186 (22%)
Query: 99 KIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSP------ 152
++ S R+G +IGK G IK+LQL +GAKI++ D+ SP+R++ ++G+
Sbjct: 51 RLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIE---DSPNESPDRVIMVIGASNIDGKV 107
Query: 153 ------------------EAIADAEKLINEVLAEAE--SGGSGMIGRRLTGQSGSADEFS 192
EA+ I EV AE E G + RL S A
Sbjct: 108 MVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQA---- 163
Query: 193 MQIPNNKVGLIIGKGGETIKSMQAESGARIQVIPLHLPPGDPSTERTLKIDGSPEQIESA 252
G +IGKGG+ ++ ++ ++G +I V +LP S + ++I+GS ++ A
Sbjct: 164 --------GSVIGKGGKVVEKIKKDTGCKIWVCKDNLPACISSPDEVIEIEGSVSSVKKA 215
Query: 253 KQLVNQ 258
V++
Sbjct: 216 LVAVSR 221
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 85 KAQYPVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNR 144
+ Q+ ++ T + + P ++G IIG+GGE +K L++ + AKI++ + P R
Sbjct: 37 REQFVINKEDTVFRYL-CPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETV---PGCDER 92
Query: 145 LVELMGSPE---AIADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADE---------FS 192
+V + S + + D +KL+ + AE I R+ + +D+
Sbjct: 93 VVTVYSSSDETNTVDDGDKLV----SPAEDA-LFKIHDRVVAEDLHSDQEEEGGPQVNAK 147
Query: 193 MQIPNNKVGLIIGKGGETIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIES 251
+ +P++++G ++GKGG+ ++++++E+GA+I+++ H+P ++ ++I G ++
Sbjct: 148 LLVPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKK 207
Query: 252 A 252
A
Sbjct: 208 A 208
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 85 KAQYPVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNR 144
+ Q+ ++ T + + P ++G IIG+GGE +K L++ + AKI++ + P R
Sbjct: 37 REQFVINKEDTVFRYL-CPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETV---PGCDER 92
Query: 145 LVELMGSPE---AIADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADE---------FS 192
+V + S + + D +KL+ + AE I R+ + +D+
Sbjct: 93 VVTVYSSSDETNTVDDGDKLV----SPAEDA-LFKIHDRVVAEDLHSDQEEEGGPQVNAK 147
Query: 193 MQIPNNKVGLIIGKGGETIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIES 251
+ +P++++G ++GKGG+ ++++++E+GA+I+++ H+P ++ ++I G ++
Sbjct: 148 LLVPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKK 207
Query: 252 A 252
A
Sbjct: 208 A 208
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 85 KAQYPVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNR 144
+ Q+ ++ T + + P ++G IIG+GGE +K L++ + AKI++ + P R
Sbjct: 37 REQFVINKEDTVFRYL-CPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETV---PGCDER 92
Query: 145 LVELMGSPE---AIADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADE---------FS 192
+V + S + + D +KL+ + AE I R+ + +D+
Sbjct: 93 VVTVYSSSDETNTVDDGDKLV----SPAEDA-LFKIHDRVVAEDLHSDQEEEGGPQVNAK 147
Query: 193 MQIPNNKVGLIIGKGGETIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIES 251
+ +P++++G ++GKGG+ ++++++E+GA+I+++ H+P ++ ++I G ++
Sbjct: 148 LLVPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKK 207
Query: 252 A 252
A
Sbjct: 208 A 208
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 85 KAQYPVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNR 144
+ Q+ ++ T + + P ++G IIG+GGE +K L++ + AKI++ + P R
Sbjct: 37 REQFVINKEDTVFRYL-CPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETV---PGCDER 92
Query: 145 LVELMGSPE---AIADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADE---------FS 192
+V + S + + D +KL+ + AE I R+ + +D+
Sbjct: 93 VVTVYSSSDETNTVDDGDKLV----SPAEDA-LFKIHDRVVAEDLHSDQEEEGGPQVNAK 147
Query: 193 MQIPNNKVGLIIGKGGETIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIES 251
+ +P++++G ++GKGG+ ++++++E+GA+I+++ H+P ++ ++I G ++
Sbjct: 148 LLVPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKK 207
Query: 252 A 252
A
Sbjct: 208 A 208
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 85 KAQYPVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNR 144
+ Q+ ++ T + + P ++G IIG+GGE +K L++ + AKI++ + P R
Sbjct: 37 REQFVINKEDTVFRYL-CPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETV---PGCDER 92
Query: 145 LVELMGSPE---AIADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADE---------FS 192
+V + S + + D +KL+ + AE I R+ + +D+
Sbjct: 93 VVTVYSSSDETNTVDDGDKLV----SPAEDA-LFKIHDRVVAEDLHSDQEEEGGPQVNAK 147
Query: 193 MQIPNNKVGLIIGKGGETIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIES 251
+ +P++++G ++GKGG+ ++++++E+GA+I+++ H+P ++ ++I G ++
Sbjct: 148 LLVPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKK 207
Query: 252 A 252
A
Sbjct: 208 A 208
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 106 RVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAE------ 159
R+G IGK G IKSLQ +GA+I++ DA + P R++ ++ + D
Sbjct: 30 RIGAFIGKSGSVIKSLQQLTGARIRID---DAPVDCPERVIVVIVNLNGDGDVSLNPQEA 86
Query: 160 --KLINEVL--AEAESGGSGM----IGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETI 211
K+ +L A AES G+G+ + RL +G A G +IGKGG +
Sbjct: 87 LLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQA------------GGVIGKGGMVV 134
Query: 212 KSMQAESGARIQVIPLHLPPGDPSTERTLKIDGSPEQIESA 252
++A++G RI+V+ LP ++ ++I G ++ A
Sbjct: 135 AKIRADTGCRIRVLNDKLPACTKPSDEIIEIQGIASSVKKA 175
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 155 IADAEKLINEVLAEAESGG---SGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETI 211
I A L+ E +AE E G G G RL I +N+VG I+GKGG I
Sbjct: 140 IMRAVMLVFERVAEDEGGDESKKGYFGLRLL------------ILSNQVGCILGKGGSVI 187
Query: 212 KSMQAESGARIQVIPL-HLPPGDPSTERTLKIDGSPEQIESAKQLVNQIINGENRPRN 268
K M AESGA+I+++P +P ++ ++I G E + A Q V Q + EN PR+
Sbjct: 188 KRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLV-ENSPRD 244
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 155 IADAEKLINEVLAEAESGG---SGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETI 211
I A L+ E +AE E G G G RL I +N+VG I+GKGG I
Sbjct: 140 IMRAVMLVFERVAEDEGGDESKKGYFGLRLL------------ILSNQVGCILGKGGSVI 187
Query: 212 KSMQAESGARIQVIPL-HLPPGDPSTERTLKIDGSPEQIESAKQLVNQIINGENRPRN 268
K M AESGA+I+++P +P ++ ++I G E + A Q V Q + EN PR+
Sbjct: 188 KRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLV-ENSPRD 244
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 103 PSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAE--- 159
P ++G IIG+GGE +K L+L + AKI++ + P R+V + + D E
Sbjct: 56 PVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETV---PGCDERVVTVYSVSDESNDFEDSG 112
Query: 160 ---------------KLINEVLAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLII 204
K+I E L E M ++ G G + + ++++G +I
Sbjct: 113 EFMCPAMDALVRIHQKVIAEDLRGVEDEDVDM--EKVDG--GDLVTAKLLVASDQIGCVI 168
Query: 205 GKGGETIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIESAKQLVNQI 259
GKGG+ ++++++E+GA+I+++ LP +++ ++I G +I K+ + Q+
Sbjct: 169 GKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISG---EIAVVKKALIQV 221
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 103 PSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAE--- 159
P ++G IIG+GGE +K L+L + AKI++ + P R+V + + D E
Sbjct: 56 PVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETV---PGCDERVVTVYSVSDESNDFEDSG 112
Query: 160 ---------------KLINEVLAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLII 204
K+I E L E M ++ G G + + ++++G +I
Sbjct: 113 EFMCPAMDALVRIHQKVIAEDLRGVEDEDVDM--EKVDG--GDLVTAKLLVASDQIGCVI 168
Query: 205 GKGGETIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIESAKQLVNQI 259
GKGG+ ++++++E+GA+I+++ LP +++ ++I G +I K+ + Q+
Sbjct: 169 GKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISG---EIAVVKKALIQV 221
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 99 KIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPE----- 153
++ +P G+VG IIG+ G+ IK L + A+++V +DAD P+R++ + G E
Sbjct: 73 RLIVPVGKVGGIIGRKGDLIKKLCDETKARVRV---LDADLGIPDRIILISGKEELEAAI 129
Query: 154 --AIADAEKLINEV--LAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGE 209
A+ ++ V L+E +S G G L + + + + +IGK G
Sbjct: 130 SPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCS-------IRLLVASTQAISLIGKQGT 182
Query: 210 TIKSMQAESGARIQVI 225
I+S+Q SGA ++V+
Sbjct: 183 IIRSIQESSGASVRVL 198
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 99 KIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPE----- 153
++ +P +VG+IIG+ GE IK + A+I+V +DA +P+R+V + G +
Sbjct: 47 RLIVPVVKVGIIIGRKGELIKKTCEETHARIRV---LDAPVGTPDRIVLISGKEDLEAPL 103
Query: 154 --AIADAEKLINEV--LAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGE 209
A+ ++ V L+E ++ + G L + + + + +IGK G
Sbjct: 104 SPAMDAILRIFKRVSGLSETDNNNTAAAGVALCS-------IRLLVASTQAINLIGKQGS 156
Query: 210 TIKSMQAESGARIQVIP-LHLPPGDPSTERTLKIDGSPEQIESAKQLV 256
+IK++Q +GA I+V+ LP + ER + + G ++ A + V
Sbjct: 157 SIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAV 204
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 96 SSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAI 155
S ++ +P+ +VG IIG+ GE IK + + A++++ +D P + R V + E
Sbjct: 115 SVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKI---LDGPPGTSERAVMVSAKDEPG 171
Query: 156 ADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADEFSMQ--IPNNKVGLIIGKGGETIKS 213
+ ++ +L + G L SG A + S + +P ++ G +IGK G T+KS
Sbjct: 172 SSLPPAVDGLLKAHKRLIDG-----LDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKS 226
Query: 214 MQAESGARIQVIPLH-LPPGDPSTERTLKIDGSPEQIESAKQLV 256
+Q S ++V+ LP +R +++ G P + A +++
Sbjct: 227 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMI 270
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 106 RVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEA------IADAE 159
+VG +IGKGG +++LQ +GA IQ+ +DA P+S R+V + + DA
Sbjct: 237 KVGSLIGKGGSVVRALQNETGASIQI---VDAGPDSDERVVVISALENSDQKHSPAQDAV 293
Query: 160 KLINEVLAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETIKSMQAESG 219
++ L E S + RL +S +VG ++GKGG I M+ +G
Sbjct: 294 IRVHGRLTEIGFEHSNAVVARLLVRSP------------QVGCLLGKGGHVISEMRRVTG 341
Query: 220 ARIQVIPLHLPPGDPSTERTLKIDGSPEQIESA-----KQLVNQIINGENRPRNSG 270
A I++ E +++ G+ + ++ A ++ II +N P N G
Sbjct: 342 ANIRIFSKEQIKYISHNEEVVQVIGTLQSVQDALFHITSRIRETIIPMKNTPPNFG 397
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 96 SSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAI 155
S ++ +P+ +VG IIG+ GE IK + + A++++ +D P + R V + E
Sbjct: 47 SVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKI---LDGPPGTSERAVMVSAKDEPG 103
Query: 156 ADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADEFSMQ--IPNNKVGLIIGKGGETIKS 213
+ ++ +L + G L SG A + S + +P ++ G +IGK G T+KS
Sbjct: 104 SSLPPAVDGLLKAHKRLIDG-----LDAPSGLAGKVSTKFLVPASQAGSLIGKQGGTVKS 158
Query: 214 MQAESGARIQVIPLH-LPPGDPSTERTLKIDGSPEQIESAKQLV 256
+Q S ++V+ LP +R +++ G P + A +++
Sbjct: 159 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMI 202
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 31/173 (17%)
Query: 99 KIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMG-------- 150
++ +P+ +VG IIG+ GE IK + + A++++ +D + R V +
Sbjct: 168 RMLVPAQKVGSIIGRKGEFIKKITEETRARVKI---LDGPQGTAERAVMVSAKEEPDRPI 224
Query: 151 --SPEAIADAEKLINEVLAE----AESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLII 204
+ E + K + V++E A+ G I R L + + + G +I
Sbjct: 225 PPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLL-------------VADTQAGSLI 271
Query: 205 GKGGETIKSMQAESGARIQVI-PLHLPPGDPSTERTLKIDGSPEQIESAKQLV 256
GK G TIK Q +G I+++ HLP + ++I G P + A +L+
Sbjct: 272 GKQGSTIKIFQDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELI 324
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 99 KIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMG-------- 150
++ +P+ +VG IIG+ GE IK + + A++++ +D + R V +
Sbjct: 168 RMLVPAQKVGSIIGRKGEFIKKITEETRARVKI---LDGPQGTAERAVMVSAKEEPDRPI 224
Query: 151 --SPEAIADAEKLINEVLAE----AESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLII 204
+ E + K + V++E A+ G I R L + + + G +I
Sbjct: 225 PPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLL-------------VADTQAGSLI 271
Query: 205 GKGGETIKSMQAESGARIQVI--PLHLPPGDPSTERTLKIDGSPEQIESAKQLV 256
GK G TIK Q +G I+++ HLP + ++I G P + A +L+
Sbjct: 272 GKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELI 325
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 99 KIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMG-------- 150
++ +P+ +VG IIG+ GE IK + + A++++ +D + R V +
Sbjct: 168 RMLVPAQKVGSIIGRKGEFIKKITEETRARVKI---LDGPQGTAERAVMVSAKEEPDRPI 224
Query: 151 --SPEAIADAEKLINEVLAE----AESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLII 204
+ E + K + V++E A+ G I R L + + + G +I
Sbjct: 225 PPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLL-------------VADTQAGSLI 271
Query: 205 GKGGETIKSMQAESGARIQVI--PLHLPPGDPSTERTLKIDGSPEQIESAKQLV 256
GK G TIK Q +G I+++ HLP + ++I G P + A +L+
Sbjct: 272 GKQGSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELI 325