Miyakogusa Predicted Gene

Lj1g3v1785790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1785790.1 Non Characterized Hit- tr|D8TLL4|D8TLL4_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,30.7,3e-16,seg,NULL,CUFF.27821.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g081440.1 | hypothetical protein | HC | chr3:36878121-3688...   422   e-118

>Medtr3g081440.1 | hypothetical protein | HC |
           chr3:36878121-36881123 | 20130731
          Length = 257

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/246 (80%), Positives = 222/246 (90%), Gaps = 2/246 (0%)

Query: 16  YTLQPSRICNEDILFCIDIDPQSLVEMKTATGH--NGRPLTRLDSIKQSILLFVHSKLTI 73
           Y LQPSRI NEDILFCIDIDPQS+ E+K AT    NGRP TRLD+IKQ+I+LFV++KLTI
Sbjct: 11  YKLQPSRINNEDILFCIDIDPQSMAELKGATSGRPNGRPFTRLDAIKQAIVLFVNAKLTI 70

Query: 74  NPDHRFAFATLSNTVSWLKKDFSSDVESTMAAMRGLSATNISTQPDLTNLFRLAAHEAKK 133
           NP HRFAFATLS++VSWL+K+FSS+VEST+AAMR LSAT  S+QPDLT LFRLAAHEAKK
Sbjct: 71  NPQHRFAFATLSDSVSWLRKEFSSEVESTVAAMRRLSATTSSSQPDLTTLFRLAAHEAKK 130

Query: 134 SRAQGRILRVILFYCRSNVRPQHQWPVNQKLYTLDVMYLHDKPGPENCPQEVYDTLVEAL 193
           SR QGRILRVILFYCRS VRP+HQWPVNQKL+T DVMYLHDKPGP+NCPQE+YD+LVEAL
Sbjct: 131 SRMQGRILRVILFYCRSTVRPRHQWPVNQKLFTFDVMYLHDKPGPDNCPQEIYDSLVEAL 190

Query: 194 EHVSEYEGYILESGQGLARVVFRHVLILLSHPQQRCIQENIDIPKSLAKKAPQGEPMATE 253
           EHV+EYEGYILESGQGLARV+FRH+LILLSHPQQRC Q+ +DIPKSL KK PQ EPM TE
Sbjct: 191 EHVTEYEGYILESGQGLARVLFRHMLILLSHPQQRCAQDYMDIPKSLVKKVPQAEPMLTE 250

Query: 254 ENAPVS 259
           +NAP S
Sbjct: 251 DNAPSS 256