Miyakogusa Predicted Gene

Lj1g3v1785420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1785420.1 Non Characterized Hit- tr|J3MA83|J3MA83_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,85.71,0.0000000000005,seg,NULL,CUFF.27810.1
         (81 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g035660.1 | plastid transcriptionally active 14 protein | ...   105   1e-23

>Medtr2g035660.1 | plastid transcriptionally active 14 protein | HC
           | chr2:15050768-15056551 | 20130731
          Length = 480

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 55/73 (75%)

Query: 1   MRAYGIDFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMXXXXXXXXXX 60
           MRAYG+DF EGP+GFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWM          
Sbjct: 84  MRAYGVDFMEGPNGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLGH 143

Query: 61  XXXXXXNSTNPEV 73
                 NSTNPE 
Sbjct: 144 PIFDIINSTNPET 156