Miyakogusa Predicted Gene

Lj1g3v1755630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1755630.1 tr|B9IBP6|B9IBP6_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_243812
PE=4,41.29,2e-17, ,CUFF.27761.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g103310.1 | BSD domain protein | HC | chr3:47650656-476551...   189   1e-48

>Medtr3g103310.1 | BSD domain protein | HC | chr3:47650656-47655164
           | 20130731
          Length = 418

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 130/166 (78%), Gaps = 3/166 (1%)

Query: 1   MWMKELHKQMKPEFEIFGRNSFYLKDSVQPDDFSPRLVDDTCSDDTPHRTYGSETTTSSS 60
           MWM+EL KQ KPEFEIFGR+  Y +D+ Q  D +P L DDT SDD PHRTYG  TT S S
Sbjct: 255 MWMQELQKQTKPEFEIFGRSDLYSRDNAQHHDSTPSLSDDTYSDDMPHRTYGYRTT-SLS 313

Query: 61  MMADNEIEKYPVESSGTHFIDKSVTEENIV-KTENKDLRSGGPSHMIIQDYGGDDDNEWP 119
           MMADNE EKY +ESSG+H  DKSV EEN   KTENKDL+SG  S ++IQDY  DDD+  P
Sbjct: 314 MMADNESEKYTIESSGSHLSDKSVIEENPSNKTENKDLKSGRASQIMIQDYDDDDDDW-P 372

Query: 120 EEDSDLGGYVGTSLPLLNEEDISFSDLEDDDYDIKHVSSNTGSKLV 165
           ++DSDLGGY GT LP++NEEDISFSDLEDDDY IKHVSSN+ SK+V
Sbjct: 373 DDDSDLGGYSGTPLPIVNEEDISFSDLEDDDYGIKHVSSNSDSKVV 418