Miyakogusa Predicted Gene

Lj1g3v1743570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1743570.1 tr|B9IBL5|B9IBL5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_571985 PE=4
SV=1,36.14,2e-18,seg,NULL,CUFF.27748.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g017830.1 | hypothetical protein | HC | chr1:5066497-50677...   155   2e-38
Medtr1g017830.2 | hypothetical protein | HC | chr1:5066647-50675...   155   2e-38
Medtr3g103290.1 | hypothetical protein | HC | chr3:47637625-4763...   143   7e-35
Medtr3g103290.2 | hypothetical protein | HC | chr3:47637625-4763...   143   7e-35

>Medtr1g017830.1 | hypothetical protein | HC | chr1:5066497-5067776
           | 20130731
          Length = 162

 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 19/173 (10%)

Query: 1   MMRSKGQSQSMFMKIMASPFRALGRARDAYVRSITTCGQSVSYGN-PMDPAGRFSSLSRS 59
           MMR KGQ+Q+MF++IM SP RALG+ARDAYVRSIT CGQ++SYG+ PMD A +F SLSRS
Sbjct: 1   MMR-KGQNQNMFVRIMCSPIRALGKARDAYVRSITNCGQNMSYGSYPMDGASKF-SLSRS 58

Query: 60  QSVATSRSGD-----GDDYAELLRAASARTMVGRIDMDLILKXXXXXXXXXHRYHTEXXX 114
           QS ATSR         +D+AEL+RAASART+  RID+DL+LK              +   
Sbjct: 59  QSAATSRRSSASLEGNEDFAELVRAASARTLGNRIDVDLVLKQQHQ--------QQQQKL 110

Query: 115 XXXXXXXXXVGMGRIDEETPYDT-SEGGVAFVAPDSYPRSKSYAVG-KRNVAF 165
                    VGM +IDE+ P+D+  EG V FVA DSYPRSKSYAVG +RNVAF
Sbjct: 111 HKGLPKSSSVGMAKIDEDMPFDSFVEGKVGFVA-DSYPRSKSYAVGHRRNVAF 162


>Medtr1g017830.2 | hypothetical protein | HC | chr1:5066647-5067511
           | 20130731
          Length = 162

 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 19/173 (10%)

Query: 1   MMRSKGQSQSMFMKIMASPFRALGRARDAYVRSITTCGQSVSYGN-PMDPAGRFSSLSRS 59
           MMR KGQ+Q+MF++IM SP RALG+ARDAYVRSIT CGQ++SYG+ PMD A +F SLSRS
Sbjct: 1   MMR-KGQNQNMFVRIMCSPIRALGKARDAYVRSITNCGQNMSYGSYPMDGASKF-SLSRS 58

Query: 60  QSVATSRSGD-----GDDYAELLRAASARTMVGRIDMDLILKXXXXXXXXXHRYHTEXXX 114
           QS ATSR         +D+AEL+RAASART+  RID+DL+LK              +   
Sbjct: 59  QSAATSRRSSASLEGNEDFAELVRAASARTLGNRIDVDLVLKQQHQ--------QQQQKL 110

Query: 115 XXXXXXXXXVGMGRIDEETPYDT-SEGGVAFVAPDSYPRSKSYAVG-KRNVAF 165
                    VGM +IDE+ P+D+  EG V FVA DSYPRSKSYAVG +RNVAF
Sbjct: 111 HKGLPKSSSVGMAKIDEDMPFDSFVEGKVGFVA-DSYPRSKSYAVGHRRNVAF 162


>Medtr3g103290.1 | hypothetical protein | HC |
           chr3:47637625-47636539 | 20130731
          Length = 158

 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 103/166 (62%), Gaps = 18/166 (10%)

Query: 5   KGQSQSMFMKIMASPFRALGRARDAYVRSITTCGQSVSYGNPMDPAGRFSSLSRSQSVAT 64
           K Q Q+  ++I+ +P R LG A+D YVRSIT CG +++Y N   P GRF +L RS S  T
Sbjct: 6   KEQKQNKIVRIITTPIRVLGIAKDMYVRSITKCGNNMNYSN---PTGRFENLPRSYSAVT 62

Query: 65  SRS---GDGDDYAELLRAASARTMVGRIDMDLILKXXXXXXXXXHRYHTEXXXXXXXXXX 121
           SRS   GD +D+AEL+RAASART+  RIDMDL+LK          +   +          
Sbjct: 63  SRSGGGGDNEDFAELMRAASARTLGNRIDMDLVLK---------QQLEPKPVSSNGLPKS 113

Query: 122 XXVGMGRIDEETPY--DTSEGGVAFVAPDSYPRSKSYAVGKRNVAF 165
             VGMGRIDEE P   D +EG V  VA +SYPRS+SYAVGKR+V  
Sbjct: 114 VSVGMGRIDEEKPSDDDIAEGDVPVVA-NSYPRSRSYAVGKRSVVL 158


>Medtr3g103290.2 | hypothetical protein | HC |
           chr3:47637625-47636539 | 20130731
          Length = 158

 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 103/166 (62%), Gaps = 18/166 (10%)

Query: 5   KGQSQSMFMKIMASPFRALGRARDAYVRSITTCGQSVSYGNPMDPAGRFSSLSRSQSVAT 64
           K Q Q+  ++I+ +P R LG A+D YVRSIT CG +++Y N   P GRF +L RS S  T
Sbjct: 6   KEQKQNKIVRIITTPIRVLGIAKDMYVRSITKCGNNMNYSN---PTGRFENLPRSYSAVT 62

Query: 65  SRS---GDGDDYAELLRAASARTMVGRIDMDLILKXXXXXXXXXHRYHTEXXXXXXXXXX 121
           SRS   GD +D+AEL+RAASART+  RIDMDL+LK          +   +          
Sbjct: 63  SRSGGGGDNEDFAELMRAASARTLGNRIDMDLVLK---------QQLEPKPVSSNGLPKS 113

Query: 122 XXVGMGRIDEETPY--DTSEGGVAFVAPDSYPRSKSYAVGKRNVAF 165
             VGMGRIDEE P   D +EG V  VA +SYPRS+SYAVGKR+V  
Sbjct: 114 VSVGMGRIDEEKPSDDDIAEGDVPVVA-NSYPRSRSYAVGKRSVVL 158